Skip to content

Proposed Organization and Place for AI and Heuristic Predictions of BioPolymer properties #982

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
trishorts wants to merge 9 commits into
base: master
Choose a base branch
from
Open

Proposed Organization and Place for AI and Heuristic Predictions of BioPolymer properties #982

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
bee41ee
circular peptide graph creation and search
trishorts Nov 12, 2025
cd4c5cb
allow for missed peaks and be robust to noise
trishorts Nov 12, 2025
bed5d90
eliminates candidates with specific motifs
trishorts Nov 12, 2025
7a15dae
speedier with motif handling
trishorts Nov 12, 2025
c8c9922
ushort
trishorts Nov 13, 2025
7c2f7d1
layout template for predictions
trishorts Nov 21, 2025
401bc20
Merge branch 'master' into predictions
trishorts Nov 21, 2025
70fcb67
eliminate stuff that shouldn't be there
trishorts Nov 21, 2025
135cf79
Merge branch 'predictions' of https://github.com/trishorts/mzLib into…
trishorts Nov 21, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 12 additions & 0 deletions mzLib/Predictions/BioPolymerCrossSection.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class BioPolymerCrossSection
{
}
}
12 changes: 12 additions & 0 deletions mzLib/Predictions/BioPolymerDectectability.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class BioPolymerDectectability

Copilot AI Nov 21, 2025

Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The class name "BioPolymerDectectability" has a spelling error. It should be "BioPolymerDetectability" (with two 't's in "Detectability").

Suggested change
internal class BioPolymerDectectability
internal class BioPolymerDetectability

Copilot uses AI. Check for mistakes.
{
}
}
12 changes: 12 additions & 0 deletions mzLib/Predictions/BioPolymerElutionRetention.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class BioPolymerElutionRetention
{
}
}
12 changes: 12 additions & 0 deletions mzLib/Predictions/BioPolymerFragmentation.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class BioPolymerFragmentation
{
}
}
12 changes: 12 additions & 0 deletions mzLib/Predictions/Interfaces.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class Interfaces
{
}
}
9 changes: 9 additions & 0 deletions mzLib/Predictions/Predictions.csproj
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
<Project Sdk="Microsoft.NET.Sdk">

<PropertyGroup>
<TargetFramework>net8.0</TargetFramework>
<ImplicitUsings>enable</ImplicitUsings>
<Nullable>enable</Nullable>
</PropertyGroup>

</Project>
12 changes: 12 additions & 0 deletions mzLib/Predictions/WebClients.cs
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Predictions
{
internal class WebClients
{
}
}
117 changes: 115 additions & 2 deletions mzLib/mzLib.sln
View file
Open in desktop

Large diffs are not rendered by default.

Loading