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Pull requests: smith-chem-wisc/mzLib
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Build an SDRF-Proteomics file from a search
#1174
opened Aug 16, 2026 by
trishorts
Contributor
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Share the PRIDE pager, and close the understated total_records truncation
#1173
opened Aug 16, 2026 by
trishorts
Contributor
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Write schema-valid mzML ids and fix the mzIdentML 1.1.0 namespace
#1171
opened Aug 16, 2026 by
acesnik
Collaborator
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State the contribution licence as LGPL-3.0-or-later, matching LICENSE
#1167
opened Aug 16, 2026 by
acesnik
Collaborator
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Add an MGF writer, and let MS level round-trip through the format
#1165
opened Aug 15, 2026 by
acesnik
Collaborator
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Read negative charge states from MGF CHARGE lines
#1164
opened Aug 15, 2026 by
acesnik
Collaborator
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Binary search GetClosestOneBasedSpectrumNumber instead of walking every scan
#1163
opened Aug 15, 2026 by
acesnik
Collaborator
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Ship XML documentation so consumers get tooltips, and point the README at the wiki
#1162
opened Aug 15, 2026 by
acesnik
Collaborator
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Record the redistributed native libraries and the Chronologer model in the third-party notices
#1161
opened Aug 15, 2026 by
acesnik
Collaborator
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Build Bruker and timsTOF file paths with Path.Combine
#1159
opened Aug 15, 2026 by
acesnik
Collaborator
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Drop the architecture-stamped Thermo MassPrecisionEstimator reference, and guard against it returning
#1156
opened Aug 14, 2026 by
acesnik
Collaborator
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Build PEP training rows in a fixed order, so match-between-runs is reproducible
#1155
opened Aug 14, 2026 by
acesnik
Collaborator
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A variant database was not one decoy per target, each a reversal of it
#1154
opened Aug 14, 2026 by
acesnik
Collaborator
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Carry the quantification allow-list through MergeResultsWith
#1151
opened Aug 13, 2026 by
trishorts
Contributor
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Keep match-between-runs within a digestion agent
#1148
opened Aug 13, 2026 by
acesnik
Collaborator
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Carry retention times and protein groups through MergeResultsWith
#1147
opened Aug 13, 2026 by
acesnik
Collaborator
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fix(flashlfq): bound each peak window to one charge state
#1130
opened Aug 3, 2026 by
trishorts
Contributor
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feat(flashlfq): export the raw MS1 peaks around each quantified peak
#1122
opened Jul 31, 2026 by
Alexander-Sol
Contributor
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Opt-in: treat a cleavage-blocking modification as abolishing its cleavage site (Modification.BlocksCleavage)
#1119
opened Jul 24, 2026 by
trishorts
Contributor
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Add isotopically-unresolved (average-mass) envelope support
Maintenance
The user isn't impacted by it, it's purely behind the scenes
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