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New tool: vg paths #8168

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New tool: vg paths #8168

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aca58cf
Adjust profile eversion of vg giraffe
Maed0x Jul 7, 2026
29e98bc
add vg paths
Maed0x Jul 7, 2026
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4 changes: 2 additions & 2 deletions tools/vg/giraffe.xml
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
<tool id="vg_giraffe" name="vg giraffe" version="@TOOL_VERSION_GIRAFFE@+galaxy@VERSION_SUFFIX_GIRAFFE@" profile="@PROFILE@">
<tool id="vg_giraffe" name="vg giraffe" version="@TOOL_VERSION_ADDITION@+galaxy@VERSION_SUFFIX_ADDITION@" profile="@PROFILE@">
<description>is a fast haplotype-aware read mapper</description>
<macros>
<import>macros.xml</import>
</macros>
<requirements>
<requirement type="package" version="@TOOL_VERSION_GIRAFFE@">vg</requirement>
<requirement type="package" version="@TOOL_VERSION_ADDITION@">vg</requirement>
<requirement type="package" version="1.23.1">samtools</requirement>
</requirements>
<command detect_errors="aggressive"><![CDATA[
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6 changes: 3 additions & 3 deletions tools/vg/macros.xml
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Expand Up @@ -5,9 +5,9 @@
</requirements>
</xml>
<token name="@TOOL_VERSION@">1.23.0</token>
<token name="@TOOL_VERSION_GIRAFFE@">1.73.0</token>
<token name="@VERSION_SUFFIX_GIRAFFE@">0</token>
<token name="@PROFILE@">26.1</token>
<token name="@TOOL_VERSION_ADDITION@">1.73.0</token>
<token name="@VERSION_SUFFIX_ADDITION@">0</token>
<token name="@PROFILE@">26.0</token>
<xml name="param_xg_name_for_htslib">
<param argument="--xg-name" type="data" format="xg" optional="true" label="XG Graph" help="Writing the alignments in SAM, BAM, or CRAM format can have poor performance. Specify a XG graph that is compatible with the input graph to avoid that. This is mandatory if your input GBZ or GBWTGraph is missing reference paths for surjection (e.g., if it was created with a vg version older than 1.37.0). This option is ignored if the input graph is already an XG graph"/>
</xml>
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