New tool: vg paths#8168
Open
Maed0x wants to merge 2 commits into
Open
Conversation
github-project-automation
Bot
moved this to Triage/Discuss
in Galaxy Tool Developers SIG Board
SaimMomin12
reviewed
Jul 8, 2026
SaimMomin12
left a comment
SaimMomin12
left a comment
Contributor
There was a problem hiding this comment.
Some more stringent tests might be helpful
| <param argument="--exclude-sample" type="text" optional="true" label="Exclude from sample" help="Exclude paths belonging to this sample. Note: Cannot exclude the same sample when selecting paths by sample name"/> | ||
| <conditional name="output_con"> | ||
| <param name="type" type="select" label="Output Type"> | ||
| <option value="">Select an output type ...</option> |
Contributor
There was a problem hiding this comment.
Suggested change
| <option value="">Select an output type ...</option> | |
| <option value="">Select an output type</option> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
FOR CONTRIBUTOR:
There are two labels that allow to ignore specific (false positive) tool linter errors:
skip-version-check: Use it if only a subset of the tools has been updated in a suite.skip-url-check: Use it if github CI sees 403 errors, but the URLs work.To request a review once your PR is ready, comment "please review" on the PR. This will
automatically apply the
ready-for-reviewlabel if the PR is not a draft, all reviewthreads are resolved, and all CI checks have passed.
This PR adds
vg pathsto the vg tool collection. It is part of the current ongoing update of vg #7623This PR also updates
vg giraffeso that both tools share the same variables within the macros file + enabling installation on Galaxy 26.0The missing data types have already been added in #22935. The profile was reduced to 26.0 so the tools can be installed on the European Galaxy instance for a thesis.
Thank you!