mzIdentML output

The Human Proteome Organization (HUPO) Proteomics Standards Initiative has provided XML Schema, controlled vocabulary and documentation to facilitate data comparison, exchange and verification. We support this initiative. The results from proteomics searches, where protein parsimony is selected, are provided as .mzID in addition to other MetaMorpheus specific tab-delimited text files.

These .mzID results files can be uploaded directly to the proteomeXchange proteomics data repository. They can also be loaded into Peptide Shaker for further evaluation.