Repositories list

• compi-pipeline-engineering

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2026Jun 8, 2026

• DiMiCount

  Public
  Public Counting Model is an open-source end-to-end pipeline for object counting on microscopy and mosaic images. It provides YOLO-compatible dataset generation,…

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2026May 14, 2026

• compi-gui

  Public
  Universal Graphical User Interface for Compi.

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• compi

  Public
  Java Framework for Computational Pipelines

  pipelineworkflow-enginejava-framework+ 3

  pipelineworkflow-enginejava-frameworkpipeline-frameworkcli-applicationcomputational-pipelines

  Java

  •

  Apache License 2.0

  •00 forks•99 stars•11 issue•44 pull requests•Updated May 4, 2026May 4, 2026

• master-bioinformatica-aplicada-2025-2026

  Public
  Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2025-2026)

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• compi-module-init-working-dir

  Public
  A Compi DK module for bootstraping working directory initialization scripts

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• compi-module-docker-management

  Public
  A Compi DK module for Docker images management

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• my-brain-seq

  Public
  myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry

  dockerpipelinedifferential-expression+ 3

  dockerpipelinedifferential-expressionmirnacompimirna-seq

  R

  •

  Other

  •11 fork•99 stars•88 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• compi-rnaseq-pipeline

  Public
  A compi RNA-Seq pipeline to perform differential expression.

  rna-seqpipelinedifferential-expression+ 1

  rna-seqpipelinedifferential-expressioncompi

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• seda

  Public
  SEquence DAtaset builder

  javabioinformaticsfasta+ 3

  javabioinformaticsfastasequencesfasta-sequencessequence-dataset-builder

  Java

  •

  GNU General Public License v3.0

  •22 forks•66 stars•00 issues•44 pull requests•Updated Jan 19, 2026Jan 19, 2026

• seda-compi-pipelines

  Public
  This project provides a framework for easily creating pipelines of SEDA commands using Compi.

  Shell

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 7, 2026Jan 7, 2026

• pibadb-classification

  Public
  PIBAdb classification pipeline

  Shell

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• piba-backend

  Public
  Polyp Image BAnk (Backend)

  Java

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• pappoula

  Public
  Platform for Airborne Pollen Predition and Observation Using Localized Analytics

  Shell

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• pappoula-backend

  Public
  Backend for PAPPOULA

  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• pappoula-frontend

  Public
  Frontend for PAPPOULA

  TypeScript

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• yacli-tools

  Public
  Tools for yaCLI.

  Java

  •

  GNU Lesser General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 18, 2025Jun 18, 2025

• java-to-distributable

  Public
  Distributable generation for Java applications.

  Java

  •

  GNU Lesser General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 18, 2025Jun 18, 2025

• pibadb-ultralytics

  Public
  Polyp Detection in PIBAdb with Ultralytics Models

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2025May 28, 2025

• run-pathfindR

  Public
  An R script to run the pathfindR enrichment workflow

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2025May 28, 2025

• aedi-toma6

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2025Apr 15, 2025

• master-bioinformatica-aplicada-2024-2025

  Public
  Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2024-2025)

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2025Mar 5, 2025

• sklearn-pca

  Public
  A Python script to perform PCA and generate bidimensional plots between the three first components.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2025Feb 13, 2025

• pp-mcc-ppi-ml

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 29, 2025Jan 29, 2025

• cfr-vigo-ti-2025-ml

  Public
  Cadernos de aprendizaxe automática para o curso sobre "Tecnoloxías Intelixentes" no CFR de Vigo (Xaneiro de 2025)

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2025Jan 15, 2025

• ppi-ml

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 26, 2024Dec 26, 2024

• pandrugs-frontend

  Public
  An AngularJS frontend for the PanDrugs application

  bioinformaticsdatabasecancer+ 2

  bioinformaticsdatabasecancerdrugspersonal-medicine

  HTML

  •

  GNU General Public License v3.0

  •11 fork•33 stars•88 issues•00 pull requests•Updated Nov 28, 2024Nov 28, 2024

• deep-learning-colonoscopy

  Public
  Review in Deep Learning for Polyp Detection and Classification in Colonoscopy (https://doi.org/10.1016/j.neucom.2020.02.123).

  deep-neural-networksdeep-learningcolonoscopy

  deep-neural-networksdeep-learningcolonoscopy

  3838 forks•209209 stars•33 issues•00 pull requests•Updated Nov 12, 2024Nov 12, 2024

• uniprot-id-mapping

  Public
  UniProt ID Mapping in Java

  Java

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 25, 2024Jun 25, 2024

• pandrugs-docker

  Public
  A Dockerfile to generate an all-in-one pandrugs server

  Shell

  •33 forks•88 stars•11 issue•11 pull request•Updated Jun 20, 2024Jun 20, 2024