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    • QuPath extension to work with images through OMERO's APIs
      Java
      Apache License 2.0
      2930Updated Jun 26, 2026Jun 26, 2026
    • models

      Public
      Trained models for use with QuPath
      31600Updated Jun 25, 2026Jun 25, 2026
    • QuPath extension to run StarDist nucleus detection
      Java
      Apache License 2.0
      74820Updated Jun 25, 2026Jun 25, 2026
    • qupath

      Public
      QuPath - Open-source bioimage analysis for research
      Java
      GNU General Public License v3.0
      3531.4k302Updated Jun 25, 2026Jun 25, 2026
    • Ruby
      2000Updated Jun 24, 2026Jun 24, 2026
    • GitHub pages site
      SCSS
      MIT License
      5200Updated Jun 23, 2026Jun 23, 2026
    • Reusable JavaFX tools for QuPath (and beyond)
      Java
      Apache License 2.0
      3611Updated Jun 12, 2026Jun 12, 2026
    • A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
      Java
      Apache License 2.0
      3530Updated May 13, 2026May 13, 2026
    • A pydantic package for writing QuPath extension catalogs
      Python
      Apache License 2.0
      0100Updated Apr 28, 2026Apr 28, 2026
    • A QuPath extension for working with Deep Java Library (https://djl.ai)
      Java
      Apache License 2.0
      71000Updated Apr 23, 2026Apr 23, 2026
    • Template to help create a new QuPath extension
      Java
      152100Updated Apr 23, 2026Apr 23, 2026
    • A QuPath extension to help with learning the software
      Java
      Apache License 2.0
      3101Updated Apr 23, 2026Apr 23, 2026
    • A Java library to link QuPath and ImgLib2
      Java
      Apache License 2.0
      1100Updated Apr 23, 2026Apr 23, 2026
    • The catalog containing QuPath extensions developed by the QuPath team
      Apache License 2.0
      3100Updated Apr 8, 2026Apr 8, 2026
    • Support for parsing the BioImage Model Zoo spec in Java
      Java
      MIT License
      2020Updated Mar 30, 2026Mar 30, 2026
    • A QuPath extension to combine TIFF images
      Java
      Apache License 2.0
      0100Updated Mar 16, 2026Mar 16, 2026
    • 0000Updated Mar 16, 2026Mar 16, 2026
    • Groovy
      3000Updated Mar 9, 2026Mar 9, 2026
    • Java
      Apache License 2.0
      2641Updated Mar 2, 2026Mar 2, 2026
    • QuPath documentation
      Python
      252271Updated Mar 2, 2026Mar 2, 2026
    • qubalab

      Public
      Lab for quantitative bioimage analysis experiments in Python
      Python
      Apache License 2.0
      52000Updated Feb 16, 2026Feb 16, 2026
    • A simple JavaFX Javadoc viewer
      Java
      Apache License 2.0
      1000Updated Feb 11, 2026Feb 11, 2026
    • QuPath extension to work with images through OMERO's web API
      Java
      GNU General Public License v3.0
      111080Updated Feb 10, 2026Feb 10, 2026
    • The official QuPath extension for InstanSeg
      Java
      Apache License 2.0
      52960Updated Jan 21, 2026Jan 21, 2026
    • A manager for catalogs and extensions.
      Java
      Apache License 2.0
      2000Updated Jan 12, 2026Jan 12, 2026
    • actions

      Public
      GitHub actions for QuPath and related repositories
      Shell
      Apache License 2.0
      1000Updated Jan 7, 2026Jan 7, 2026
    • QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
      Java
      Apache License 2.0
      92911Updated Dec 3, 2025Dec 3, 2025
    • Jupyter Notebook
      Apache License 2.0
      2900Updated Nov 5, 2025Nov 5, 2025
    • QuPath extension to interactively align images
      Java
      GNU General Public License v3.0
      102910Updated Aug 7, 2025Aug 7, 2025
    • A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)
      Java
      Apache License 2.0
      3100Updated Jul 28, 2025Jul 28, 2025
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