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    33 repositories

    • toxtransformer

      Public
      BioSim model with Conditional Variational Autoencoder
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • raspis

      Public
      This is the repo for writing code and workflows to work with the complete ASPIS compound dataset. This is an R package containing the ASPIS chemcials as a datas…
      R
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•0•Updated Nov 24, 2025Nov 24, 2025

    • pubmed-entox

      Public
      Python
      •0•1•2•0•Updated Aug 29, 2024Aug 29, 2024

    • Generative-re-tests

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • ml_without_tears

      Public
      Code repository of ml-without-tears blog: https://mlwithouttears.com/
      Jupyter Notebook
      •16•0•0•0•Updated May 15, 2024May 15, 2024

    • aira

      Public
      The workshop materials for the Workshop on ‘Applications for artificial intelligence (AI) in risk assessment’ (AiRA) - Sitges, 25 November 2022
      aitoxicology
      aitoxicology
      CSS
      •
      Other
      •5•0•1•0•Updated Oct 8, 2023Oct 8, 2023

    • sysrev-notebooks

      Public
      0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • aspis4j

      Public
      an api for the ontox4j graph database
      Jupyter Notebook
      •0•0•13•0•Updated Jun 18, 2023Jun 18, 2023

    • ebc_test

      Public
      A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you to perform co-clusteri…
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Jun 12, 2023Jun 12, 2023

    • ontoxRepRes

      Public
      This repo contains the workshop materials for the ONTOX Workshop on Reproducible Ressearch
      data-sciencetoxicologyreproducible-research
      data-sciencetoxicologyreproducible-research
      HTML
      •
      Other
      •3•0•1•0•Updated Apr 17, 2023Apr 17, 2023

    • sfac

      Public
      HTML
      •0•0•0•0•Updated Feb 3, 2023Feb 3, 2023

    • rs-srvc

      Public
      Version control software for systematic reviews
      Rust
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • demo-NLP

      Public
      streamlit app for demo of en-tox pipeline
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 26, 2023Jan 26, 2023

    • srvc-template

      Public template
      A template repository for srvc projects
      Nix
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • ontoxRcourse

      Public
      The course materials for the ONTOX Introduction into R and AI course
      HTML
      •
      Other
      •0•0•1•0•Updated Nov 10, 2022Nov 10, 2022

    • workflows

      Public
      Repo with ontox workflow diagrams
      2•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • ontox-phymdos

      Public
      Phymdos - the ONTOX Physiological maps documentation software
      physiologyphysiological-dataontox
      physiologyphysiological-dataontox
      R
      •
      MIT License
      •2•3•11•0•Updated Jun 3, 2022Jun 3, 2022

    • factor-graphs-demo

      Public
      0•0•0•0•Updated May 11, 2022May 11, 2022

    • ontoxdev

      Public
      vignettes for ontox packages
      HTML
      •0•0•1•0•Updated Apr 14, 2022Apr 14, 2022

    • minerva-docker

      Public
      0•0•0•0•Updated Feb 15, 2022Feb 15, 2022

    • kGCN

      Public
      A graph-based deep learning framework for life science
      Python
      •
      Other
      •34•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • aop-ontology

      Public
      Adverse Outcome Pathway Ontology
      Web Ontology Language
      •
      Other
      •8•0•0•0•Updated Oct 19, 2021Oct 19, 2021

    • SemRep

      Public
      Prolog
      •15•0•0•0•Updated Aug 30, 2021Aug 30, 2021

    • AOPWikiRDF

      Public
      This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that is loaded with the AOP-…
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jun 29, 2021Jun 29, 2021

    • CiRA

      Public
      System behavior is often expressed by causal relations in requirements (e.g. if event 1 then event 2). Automatically extracting this embedded causal knowledge s…
      Jupyter Notebook
      •
      Other
      •5•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • text_gcn

      Public
      Graph Convolutional Networks for Text Classification. AAAI 2019
      Python
      •438•0•0•0•Updated Jun 11, 2021Jun 11, 2021

    • Reticulate_NHS_R_Community

      Public
      A deep dive into the world of R and Python integration.
      HTML
      •3•0•0•0•Updated Jan 20, 2021Jan 20, 2021

    • L1000_DILI

      Public
      Use transcriptomics from LINCS L1000 to predict DILI
      Jupyter Notebook
      •2•0•0•0•Updated Oct 2, 2020Oct 2, 2020

    • dl-keras-tf

      Public
      rstudio::conf(2020) deep learning workshop
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •80•0•0•0•Updated Jan 28, 2020Jan 28, 2020

    • BioMedR

      Public
      generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
      R
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated Oct 19, 2019Oct 19, 2019
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