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    • bisulfite sequencing pipeline from fastq to methylation reports
      Python
      GNU General Public License v3.0
      413480Updated Jun 25, 2026Jun 25, 2026
    • Jupyter Notebook
      GNU General Public License v3.0
      0100Updated Jun 23, 2026Jun 23, 2026
    • Code and reproduction for the tissue-supervised VAE bulk RNA-seq manuscript
      Python
      MIT License
      0000Updated Jun 23, 2026Jun 23, 2026
    • A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
      Python
      Other
      35109120Updated Jun 19, 2026Jun 19, 2026
    • pigx

      Public
      Pipelines in genomics
      HTML
      GNU General Public License v3.0
      72390Updated Jun 17, 2026Jun 17, 2026
    • ECGage

      Public
      HTML
      0000Updated Jun 8, 2026Jun 8, 2026
    • Getting started with Flexynesis with help from Claude Code
      0000Updated Jun 5, 2026Jun 5, 2026
    • Generate dummy spatialdata objects
      Python
      0310Updated Jun 4, 2026Jun 4, 2026
    • Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning
      Jupyter Notebook
      316400Updated Jun 3, 2026Jun 3, 2026
    • a framework for on-disk and in-memory image arrays
      R
      Other
      3652Updated May 30, 2026May 30, 2026
    • Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
      Python
      GNU General Public License v3.0
      1321230Updated May 29, 2026May 29, 2026
    • swineherd

      Public
      Let the Shepherd herd Guix System containers
      TeX
      GNU General Public License v3.0
      13010Updated May 24, 2026May 24, 2026
    • Common infrastructure used by all PiGx pipelines
      Python
      GNU General Public License v3.0
      1012Updated May 21, 2026May 21, 2026
    • Pipeline for Analysis of ChIP-Seq data
      Python
      GNU General Public License v3.0
      1010681Updated May 20, 2026May 20, 2026
    • ECG_age

      Public
      Python
      0000Updated May 20, 2026May 20, 2026
    • Python
      0200Updated May 19, 2026May 19, 2026
    • A repository for documentation and storage of neuroblastoma related gene sets
      Python
      0000Updated May 18, 2026May 18, 2026
    • cacheR

      Public
      R
      Other
      0100Updated May 18, 2026May 18, 2026
    • rstudio

      Public
      RStudio is an integrated development environment (IDE) for R
      Java
      Other
      1.2k000Updated May 16, 2026May 16, 2026
    • R Installer for SimpleITK with Elastix
      Shell
      0000Updated May 13, 2026May 13, 2026
    • VoltRon

      Public
      Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
      R
      Other
      2112321Updated Apr 28, 2026Apr 28, 2026
    • On-Disk support and dependancies for VoltRon
      Other
      1000Updated Apr 27, 2026Apr 27, 2026
    • R
      MIT License
      1000Updated Apr 27, 2026Apr 27, 2026
    • pycacheR

      Public
      Python
      Other
      0000Updated Apr 15, 2026Apr 15, 2026
    • OMERarr

      Public
      An R package for reading, writing and validating OME-Zarr (meta)data (based on ome-zarr-models.py)
      R
      1060Updated Apr 10, 2026Apr 10, 2026
    • Repository relating to the pipeline on using attention-weighted PLMs.
      Python
      Creative Commons Zero v1.0 Universal
      0110Updated Apr 6, 2026Apr 6, 2026
    • Remotes based SimpleITK R installer.
      R
      11000Updated Mar 12, 2026Mar 12, 2026
    • R-universe BIMSBbioinfo
      0000Updated Mar 11, 2026Mar 11, 2026
    • JavaScript
      0000Updated Mar 6, 2026Mar 6, 2026
    • Official Implementation of CompassDock
      Python
      Other
      32100Updated Feb 13, 2026Feb 13, 2026
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