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Move the orphaned-docs warning out of make clean and reimplement it in Python

Status: Open.

#3210 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 18, 2026

Dockerfile downloads amd64 yq from latest; make it arch-aware and version-pinned

Status: Open.

#3207 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 18, 2026

Docker build uses Python 3.10 and floating poetry; align with CI (3.12, poetry==2.4.1)

Status: Open.

#3206 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 18, 2026

Anchor CURIE-style regex patterns (validators use match(), not fullmatch())

Status: Open.

#3205 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Adopt a YAML formatter with agreed quoting/wrapping rules, enforced in CI

Status: Open.

#3203 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Run schema_pattern_linting (orphan detection) in CI and extend it to slot_groups

Status: Open.

#3202 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Policy: declare each prefix expansion once, in the module that owns it

Status: Open.

#3199 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Review and tidy the INSDC identifier slot family

Status: Open.

#3198 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Always escape regex special characters meant literally; detect and fix violations

Status: Open.

#3193 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Normalize and enforce trailing newlines in schema and example data files

Status: Open.

#3192 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Adopt a comments/todos convention for descriptive metaslots; stop using notes

Status: Open.

#3191 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026

Define an allowlist of annotation keys and where each is valid

Status: Open.

#3190 In microbiomedata/nmdc-schema;

· turbomam opened on Jun 17, 2026