ENH: Add scripts to analyze BubbleSAM and OpenCV detection results#4

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nidhinthomas-ai wants to merge 35 commits into

nidhinthomas-ai:nidhin_data_analysis

Commits on Mar 11, 2026

ENH: Add scripts for OpenCV detection

Nidhin Thomas
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ajwitmer
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TST: Modified test scripts

Nidhin Thomas
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ajwitmer
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neat_ml/tests/baseline/raw_detection.png,neat_ml/tests/baseline/raw_processed.png,neat_ml/tests/data/images/raw.tiff,neat_ml/tests/data/images_Processed/raw.tiff: convert to Git LFS

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ajwitmer
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DOC: Updated README.md with instructions

Nidhin Thomas
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ajwitmer
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ENH: Added BubbleSAM detection method

Nidhin Thomas
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ajwitmer
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ENH: Created workflow module

Nidhin Thomas
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ajwitmer
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ENH: Added analysis module

Nidhin Thomas
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ajwitmer
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TST: Fixed test_workflow.py to improve coverage

Nidhin Thomas
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ajwitmer
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TST: Added test scripts to improve coverage

Nidhin Thomas
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ajwitmer
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MAINT: PR #4 revisions
ajwitmer
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MAINT, TST, DOC, BUG: PR #4 revisions
ajwitmer
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MAINT, TST: PR #4 revisions
ajwitmer
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MAINT: fix conflicts after rebase
ajwitmer
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MAINT, TST, DOC: PR #4 revisions
ajwitmer
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Commits on Mar 12, 2026

Commits on Mar 13, 2026

Commits on Mar 20, 2026

TST, MAINT: replace general exceptions and add new test cases
ajwitmer
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Commits on Apr 23, 2026

MAINT: address reviewer comments
Adam John Witmer
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Commits on Apr 24, 2026

MAINT, TST: modify test assertion for dict comparison
ajwitmer
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Commits on Apr 25, 2026

MAINT, TST: modify dict assertions to use assert_allclose
ajwitmer
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Commits on Apr 29, 2026

MAINT: address remaining reviewer comments
ajwitmer
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Commits on May 1, 2026

BUG: fix parquet loading logic
ajwitmer
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Commits on May 3, 2026

MAINT: address reviewer comments
ajwitmer
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Commits on May 4, 2026

MAINT: address reviewer comments
ajwitmer
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Commits on Jun 3, 2026

MAINT: address AI reviewer comments
Adam Witmer
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Commits on Jun 9, 2026

MAINT: address reviewer comments
Adam Witmer
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ENH: vectorize bubblesam centroid calculation
Adam Witmer
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MAINT: modify handling of results csv filepaths
Adam Witmer
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MAINT: PR #4 revisions
Adam Witmer
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Commits on Jun 10, 2026

MAINT: address AI reviewer comment
Adam Witmer
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Commits on Jun 22, 2026

MAINT: modify pandas agg operation to use lambda function
adamwitmer
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Commits on Jun 23, 2026

MAINT: PR #4 revisions
adamwitmer
committed