Support new genome browser chain file format - #16576
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Support a new datatype for the genome browser chain file format described here: https://genome.ucsc.edu/goldenPath/help/chain.html Add meta data which lists the number of chains in the file and a sniffer for auto-detecting the chain format.
mvdbeek
reviewed
Aug 21, 2023
Reduce number of test files from 2 to 1 and make it smaller. Change doctest to be more comprehensive.
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Thank you @claudiofr! |
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Closes #16539
Support new genome browser chain file format. A description of the format is found here:
https://genome.ucsc.edu/goldenPath/help/chain.html
Create a new chain.py file and Chain class to support the new datatype and add entries in datatypes_conf.xml.sample for the new datatype.
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