Update Python dependencies - #16436
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mvdbeek merged 2 commits intoJul 24, 2023
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Jul 24, 2023
| cwl-utils==0.28 ; python_version >= "3.7" and python_version < "3.12" | ||
| cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.12" | ||
| cython==0.29.36 ; python_version >= "3.7" and python_version < "3.12" | ||
| cython==3.0.0 ; python_version >= "3.7" and python_version < "3.12" |
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Did you check if our dependencies (or at least the subset that doesn't have upstream wheels) still compile, e.g. with --no-binary :all: ?
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No, I haven't. Cython shouldn't be here at all, it's still dragged in by pysam. I hope pysam-developers/pysam#1186 is merged sooner or later.
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Run
make update-dependencies.