SQLAlchemy 2.0 upgrades to ORM usage in /lib - #16434

Merged

mvdbeek merged 29 commits into

galaxyproject:devfrom

jdavcs:dev_sa20_fix14

Sep 26, 2023

Commits on Sep 25, 2023

Fix SA2.0 ORM usage in webapps.galaxy.api
jdavcs
committed
60d3d05
Fix SA2.0 ORM usage in galaxy.actions
jdavcs
committed
b58d741
Fix SA2.0 ORM usage in galaxy.celery
jdavcs
committed
5547675
Fix SA2.0 ORM usage in galaxy.quota
jdavcs
committed
9bfc041
Fix SA2.0 ORM usage in galaxy.security
jdavcs
committed
eeba6d6
Fix SA2.0 ORM usage in galaxy.queue_worker
jdavcs
committed
3250ed8
Fix SA2.0 ORM usage in galaxy.workflow
jdavcs
committed
19a1f90
Fix SA2.0 ORM usage in galaxy.tools
jdavcs
committed
41fa1cb
Fix SA2.0 ORM usage in managers.cloud
jdavcs
committed
efb0977
Fix SA2.0 ORM usage in managers.dbkeys
jdavcs
committed
efe5224
Fix SA2.0 ORM usage in galaxy.webapps.base; refactor
jdavcs
committed
0fd6aec
Fix SA2.0 ORM usage in managers.group_roles
jdavcs
committed
ca63bc8
Fix SA2.0 ORM usage in managers.group_users
jdavcs
committed
1a665c3
Fix SA2.0 ORM usage in managers.groups
jdavcs
committed
0e4df32
Fix SA2.0 ORM usage in galaxy.webapps/reports [partially]
jdavcs
committed
2084da7
Fix SA2.0 ORM usage in managers.api_keys; refactor
jdavcs
committed
09c2efc
Fix SA2.0 ORM usage in galaxy/tool_shed/util
jdavcs
committed
f355a19
Fix SA2.0 ORM usage in in galaxy.jobs [partially]
jdavcs
committed
9e92c70
Fix SA2.0 ORM usage in webapps.galaxy.controllers.history
jdavcs
committed
8581d05
Fix SA2.0 ORM usage in webapps.galaxy.services
jdavcs
committed
de1321b
Refactor get_user_by_username, get_user_by_email; use across code base
jdavcs
committed
7a06b00
Fix SA2.0 ORM usage in galaxy.visualization
jdavcs
committed
f5d6578
Update lib/galaxy/tools/parameters/basic.py

jdavcs
and
mvdbeek
committed
6da8065
Update lib/galaxy/webapps/galaxy/controllers/history.py

jdavcs
and
mvdbeek
committed
0b1cccd
Move get_quotas into services
jdavcs
committed
1da8b1d
Raise exception if no Library found in api method
jdavcs
committed
23aa506
Move get_fasta_hdas_by_history into services
jdavcs
committed
4b6b85e
Move method into User model class
jdavcs
committed
b57d6ed
Check if user is not null before accessing user attribute
jdavcs
committed
4256d87

Navigation Menu

Uh oh!

SQLAlchemy 2.0 upgrades to ORM usage in /lib - #16434

SQLAlchemy 2.0 upgrades to ORM usage in /lib#16434
mvdbeek merged 29 commits into
galaxyproject:devfrom
jdavcs:dev_sa20_fix14

Commits on Sep 25, 2023

Fix SA2.0 ORM usage in webapps.galaxy.api

Fix SA2.0 ORM usage in galaxy.actions

Fix SA2.0 ORM usage in galaxy.celery

Fix SA2.0 ORM usage in galaxy.quota

Fix SA2.0 ORM usage in galaxy.security

Fix SA2.0 ORM usage in galaxy.queue_worker

Fix SA2.0 ORM usage in galaxy.workflow

Fix SA2.0 ORM usage in galaxy.tools

Fix SA2.0 ORM usage in managers.cloud

Fix SA2.0 ORM usage in managers.dbkeys

Fix SA2.0 ORM usage in galaxy.webapps.base; refactor

Fix SA2.0 ORM usage in managers.group_roles

Fix SA2.0 ORM usage in managers.group_users

Fix SA2.0 ORM usage in managers.groups

Fix SA2.0 ORM usage in galaxy.webapps/reports [partially]

Fix SA2.0 ORM usage in managers.api_keys; refactor

Fix SA2.0 ORM usage in galaxy/tool_shed/util

Fix SA2.0 ORM usage in in galaxy.jobs [partially]

Fix SA2.0 ORM usage in webapps.galaxy.controllers.history

Fix SA2.0 ORM usage in webapps.galaxy.services

Refactor get_user_by_username, get_user_by_email; use across code base

Fix SA2.0 ORM usage in galaxy.visualization

Update lib/galaxy/tools/parameters/basic.py

Update lib/galaxy/webapps/galaxy/controllers/history.py

Move get_quotas into services

Raise exception if no Library found in api method

Move get_fasta_hdas_by_history into services

Move method into User model class

Check if user is not null before accessing user attribute