v1.0.1

What's Changed

• Pin ilpy >= 0.6 for Gurobi/SCIP fallback fix by @bentaculum in #164

Full Changelog: v1.0.0...v1.0.1

v1.0.0

What's Changed

• Auto-discover available versions by @cmalinmayor in #155
• ci(dependabot): bump softprops/action-gh-release from 2 to 3 by @dependabot[bot] in #159
• ci(dependabot): bump actions/upload-artifact from 4 to 7 by @dependabot[bot] in #156
• ci(dependabot): bump codecov/codecov-action from 5 to 6 by @dependabot[bot] in #157
• ci(dependabot): bump actions/download-artifact from 4 to 8 by @dependabot[bot] in #158
• ci(dependabot): bump codecov/codecov-action from 6 to 7 by @dependabot[bot] in #161
• ci(dependabot): bump actions/checkout from 6 to 7 by @dependabot[bot] in #162
• Edge types by @cmalinmayor in #160

Full Changelog: v0.4.0...v1.0.0

v0.4.0

What's Changed

• 100 unify cost api by @cmalinmayor in #126
• Docs updates by @cmalinmayor in #137
• Add contributing docs by @cmalinmayor in #141
• Export TrackGraph to networkx by @cmalinmayor in #143
• Use equation syntax when defining new constraints by @cmalinmayor in #142
• Gracefully handle empty graph and graph with no edges by @cmalinmayor in #148
• refactor: update Makefile to use uv commands and remove publish target by @tlambert03 in #149
• Add merge indicator and cost by @cmalinmayor in #145
• Citation file by @cmalinmayor in #151
• Add total cost formula to documentation by @cmalinmayor in #153
• Have docs for every tagged/released version and main by @cmalinmayor in #154

Full Changelog: v0.3.1...v0.4.0

What's Changed

• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #125
• ci(dependabot): bump codecov/codecov-action from 4 to 5 by @dependabot[bot] in #128
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #130
• 100 unify cost api by @cmalinmayor in #126
• Docs updates by @cmalinmayor in #137
• Add contributing docs by @cmalinmayor in #141
• Export TrackGraph to networkx by @cmalinmayor in #143
• ci(dependabot): bump astral-sh/setup-uv from 6 to 7 by @dependabot[bot] in #147
• Use equation syntax when defining new constraints by @cmalinmayor in #142
• Gracefully handle empty graph and graph with no edges by @cmalinmayor in #148
• refactor: update Makefile to use uv commands and remove publish target by @tlambert03 in #149
• Add merge indicator and cost by @cmalinmayor in #145
• ci(dependabot): bump actions/checkout from 4 to 6 by @dependabot[bot] in #150
• Citation file by @cmalinmayor in #151
• Add total cost formula to documentation by @cmalinmayor in #153
• Attempt to have docs for every tagged/released version and dev for the current main by @cmalinmayor in #154

Full Changelog: v0.3.1...v0.4.0

v0.3.1

What's Changed

• Add sphinxcontrib_jquery to pyproject.toml by @cmalinmayor in #122
• Free appear/disappear in first/last frames by @bentaculum in #118
• Improving error message when wrong frame is provided by @JoOkuma in #120
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #121
• Add a str function to the TrackGraph with num nodes and edges by @cmalinmayor in #123

New Contributors

• @JoOkuma made their first contribution in #120

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #101
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #102
• 63 rename solver functions by @cmalinmayor in #108 BREAKING CHANGE
• Use pytest fixtures to serve the test data by @cmalinmayor in #109
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #114
• 105 remove plotly plotting by @cmalinmayor in #110 BREAKING CHANGE
• Rename and tighten type definitions by @funkey in #112
• Pass frame attribute to selected subgraph by @cmalinmayor in #119

Full Changelog: v0.2.1...v0.3.0

v0.2.1

What's Changed

• Pass verbose flag to solver by @cmalinmayor in #79
• add warning and coerce if nx graph passed to solver by @tlambert03 in #80
• feat: add get_selected_subgraph by @tlambert03 in #82
• ci(dependabot): bump softprops/action-gh-release from 1 to 2 by @dependabot in #84
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #89
• Add ExclusiveNodes constraint by @funkey in #90
• Add on_event callback to solve() method by @tlambert03 in #87
• Adapt obtaining selected subgraph by @lmanan in #94
• Compute edge distance from single position attribute, add constant by @funkey in #95
• Add constant to edge distance implementation by @cmalinmayor in #96
• Use ruff-format, add Caroline to authors by @tlambert03 in #88
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #97

New Contributors

• @cmalinmayor made their first contribution in #79
• @lmanan made their first contribution in #94

Full Changelog: v0.2.0...v0.2.1

What's Changed

• Pass verbose flag to solver by @cmalinmayor in #79
• add warning and coerce if nx graph passed to solver by @tlambert03 in #80
• feat: add get_selected_subgraph by @tlambert03 in #82
• ci(dependabot): bump softprops/action-gh-release from 1 to 2 by @dependabot in #84
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #89
• Add ExclusiveNodes constraint by @funkey in #90
• Add on_event callback to solve() method by @tlambert03 in #87
• Adapt obtaining selected subgraph by @lmanan in #94
• Compute edge distance from single position attribute, add constant by @funkey in #95
• Add constant to edge distance implementation by @cmalinmayor in #96
• Use ruff-format, add Caroline to authors by @tlambert03 in #88
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #97

New Contributors

• @cmalinmayor made their first contribution in #79
• @lmanan made their first contribution in #94

Full Changelog: v0.2.0...v0.2.1

v0.2.0

Full Changelog: v0.1.4...v0.2.0

v0.1.4

What's Changed

• add tests on github actions by @tlambert03 in #4
• Use ruff instead of flake8, use pre-commit as a lint-runner by @tlambert03 in #6
• add test dependency on structsvm by @tlambert03 in #10
• Add type hints and mypy check by @tlambert03 in #5
• apply black formatting by @tlambert03 in #11
• remove github from structsvm dep by @tlambert03 in #12
• Fix bug: Feature matrix resizing by @bentaculum in #13
• Introduce variable types by @funkey in #22
• Make structsvm hard dependency by @bentaculum in #21
• fixing lint issues by @tlambert03 in #27
• Hyperedges enabled and api according to wishlist by @fjug in #26
• Update ssvm by @bentaculum in #23
• Fix types and linting; formalize typing of Node ids and Edge ids by @tlambert03 in #28
• Merge docs into the main branch by @tlambert03 in #38
• Add typing and tests to the plot module by @tlambert03 in #32
• catch ilpy v03 solution return type by @tlambert03 in #42
• Move example graphs into package by @bentaculum in #39
• update ilpy API to v0.3.0 by @tlambert03 in #43
• docs: suppress structsvm warning on docs build by @tlambert03 in #44
• add dependabot config to auto-update CI dependencies by @tlambert03 in #45
• docs: build docs on CI deploy to github-pages on push to main by @tlambert03 in #40
• Add generic expression constraint (generalization of Pin) by @tlambert03 in #31
• feat: use ilpy.expressions in motile Constraints by @tlambert03 in #30
• add simple variable protocol test by @tlambert03 in #48
• ci(dependabot): bump actions/deploy-pages from 1 to 2 by @dependabot in #49
• test: add tests for each constraint by @tlambert03 in #47
• Fix plotting by @bentaculum in #51
• ci(dependabot): bump actions/upload-pages-artifact from 1 to 2 by @dependabot in #50
• Add disappear cost by @bentaculum in #52
• ci(dependabot): bump actions/checkout from 3 to 4 by @dependabot in #55
• Many updates to documentation, add docstyle linting by @tlambert03 in #46
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #62
• ci(dependabot): bump actions/upload-pages-artifact from 2 to 3 by @dependabot in #71
• ci(dependabot): bump actions/setup-python from 4 to 5 by @dependabot in #68
• ci(dependabot): bump actions/deploy-pages from 2 to 4 by @dependabot in #70
• Update type hints for ilpy objects by @tlambert03 in #59
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #65
• ci(dependabot): bump conda-incubator/setup-miniconda from 2 to 3 by @dependabot in #64
• Generalize costs by @bentaculum in #54
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #72
• ci(dependabot): bump codecov/codecov-action from 3 to 4 by @dependabot in #75

New Contributors

• @funkey made their first contribution in #22
• @fjug made their first contribution in #26
• @dependabot made their first contribution in #49
• @pre-commit-ci made their first contribution in #62

Full Changelog: v0.1.2...v0.1.4

v0.1.3

This release is the same as 0.1.2, except it adds support for the upcoming ilpy release that changes the return type of Solution.solve().

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• rename pylp to ilpy by @tlambert03 in #1
• build: move from setup.py to pyproject.tom and use hatch by @tlambert03 in #2
• bump version and add deploy workflow by @tlambert03 in #3

New Contributors

• @tlambert03 made their first contribution in #1

Full Changelog: https://github.com/funkelab/motile/commits/v0.1.2