[Snyk] Fix for 3 vulnerabilities

[arthrod]

Snyk has created this PR to fix 3 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

• backend/requirements.txt

⚠️ Warning

openai 1.53.1 requires jiter, which is not installed.
openai 1.53.1 has requirement typing-extensions<5,>=4.11, but you have typing-extensions 4.7.1.
onnxruntime 1.14.1 has requirement numpy>=1.21.6, but you have numpy 1.21.3.
google-auth-oauthlib 1.2.3 has requirement google-auth<2.42.0,>=2.15.0, but you have google-auth 2.43.0.
fpdf2 2.8.2 requires fonttools, which is not installed.
fake-useragent 1.5.1 has requirement importlib-metadata~=4.0; python_version < "3.8", but you have importlib-metadata 6.7.0.
extract-msg 0.39.2 has requirement tzlocal==4.2, but you have tzlocal 5.1.
anthropic 0.38.0 requires jiter, which is not installed.
anthropic 0.38.0 requires tokenizers, which is not installed.

---

Important

• Check the changes in this PR to ensure they won't cause issues with your project.
• Max score is 1000. Note that the real score may have changed since the PR was raised.
• This PR was automatically created by Snyk using the credentials of a real user.
• Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

---

Note: You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.

For more information:
🧐 View latest project report
📜 Customise PR templates
🛠 Adjust project settings
📚 Read about Snyk's upgrade logic

---

Learn how to fix vulnerabilities with free interactive lessons:

🦉 XML Injection
🦉 Allocation of Resources Without Limits or Throttling

[bolt-new-by-stackblitz]

Run & review this pull request in StackBlitz Codeflow.

[chatgpt-codex-connector]

You have reached your Codex usage limits for code reviews. You can see your limits in the Codex usage dashboard.

[coderabbitai]

Important

Review skipped

Ignore keyword(s) in the title.

Please check the settings in the CodeRabbit UI or the .coderabbit.yaml file in this repository. To trigger a single review, invoke the @coderabbitai review command.

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch snyk-fix-b3c39cb17e6636bf76e78a9cd98e8df9

---

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[gemini-code-assist]

Summary of Changes

Hello @arthrod, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request, automatically generated by Snyk, aims to enhance the project's security posture by resolving three identified vulnerabilities in its Python dependencies. It achieves this by updating specific package versions in backend/requirements.txt, ensuring the application runs with more secure components.

Highlights

• Vulnerability Fixes: This pull request addresses and fixes 3 identified security vulnerabilities within the project's pip dependencies.
• Automated Dependency Updates: The changes were automatically generated by Snyk to upgrade fonttools to version 4.61.0 and urllib3 to version 2.6.0 in backend/requirements.txt.
• Snyk Integration: This PR was created by Snyk as part of an automated security workflow to maintain dependency health.

Using Gemini Code Assist

The full guide for Gemini Code Assist can be found on our documentation page, here are some quick tips.

Invoking Gemini

You can request assistance from Gemini at any point by creating a comment using either /gemini <command> or @gemini-code-assist <command>. Below is a summary of the supported commands on the current page.

Feature	Command	Description
Code Review	/gemini review	Performs a code review for the current pull request in its current state.
Pull Request Summary	/gemini summary	Provides a summary of the current pull request in its current state.
Comment	@gemini-code-assist	Responds in comments when explicitly tagged, both in pull request comments and review comments.
Help	/gemini help	Displays a list of available commands.

Customization

To customize Gemini Code Assist for GitHub experience, repository maintainers can create a configuration file and/or provide a custom code review style guide (such as PEP-8 for Python) by creating and adding files to a .gemini/ folder in the base of the repository. Detailed instructions can be found here.

Limitations & Feedback

Gemini Code Assist may make mistakes. Please leave feedback on any instances where its feedback is incorrect or counter productive. You can react with 👍 and 👎 on @gemini-code-assist comments. If you're interested in giving your feedback about your experience with Gemini Code Assist for Github and other Google products, sign up here.

You can also get AI-powered code generation, chat, as well as code reviews directly in the IDE at no cost with the Gemini Code Assist IDE Extension.

Footnotes

1. Review the Privacy Notices, Generative AI Prohibited Use Policy, Terms of Service, and learn how to configure Gemini Code Assist in GitHub here. Gemini can make mistakes, so double check it and use code with caution. ↩

[gemini-code-assist]

Code Review

This pull request from Snyk aims to fix security vulnerabilities by pinning fonttools and urllib3 in requirements.txt. However, the proposed versions for these packages do not appear to exist on PyPI, which is a critical issue that will break the build. I have provided a comment detailing this and suggesting how to find the correct versions. I have also added a medium-severity comment regarding the inconsistent dependency management in the project, recommending the use of pyproject.toml as the single source of truth to ensure consistent environments.

[gemini-code-assist]

The versions suggested for fonttools and urllib3 appear to be incorrect and will likely cause the build to fail as they don't seem to exist on PyPI.

• For fonttools, version >=4.61.0 is suggested, but the latest version on PyPI appears to be 4.53.1.
• For urllib3, version >=2.6.0 is suggested, but the latest version on PyPI is 2.2.2. The vulnerabilities mentioned (SNYK-PYTHON-URLLIB3-14192442, SNYK-PYTHON-URLLIB3-14192443) are fixed in versions >=1.26.18 for the 1.x series and >=2.2.1 for the 2.x series.

Please investigate and pin to the correct, existing versions that resolve the vulnerabilities. For urllib3, urllib3>=2.2.2 would be a safe choice.

For better build reproducibility in your Docker environment, which installs from this file directly, consider pinning to an exact version with == once the correct versions are identified, for example urllib3==2.2.2.

[gemini-code-assist]

This project uses pyproject.toml to declare dependencies, but this change only modifies requirements.txt. This creates an inconsistency between the development environment (managed by rye, using pyproject.toml and uv.lock) and the Docker environment (using requirements.txt).

To ensure consistency and simplify dependency management, I recommend the following:

1. Add these pinned dependencies to pyproject.toml.
2. Regenerate requirements.txt and uv.lock from pyproject.toml as the single source of truth.

This will prevent potential bugs caused by different dependency versions in different environments.

[openhands-ai]

Looks like there are a few issues preventing this PR from being merged!

• GitHub Actions are failing:
  • Integration Test

If you'd like me to help, just leave a comment, like

@OpenHands please fix the failing actions on PR #94 at branch `snyk-fix-b3c39cb17e6636bf76e78a9cd98e8df9`

Feel free to include any additional details that might help me get this PR into a better state.

_{^{You can manage your notification settings}}