1.8.0 - Guangzhou

What's Changed

• Add support for .dia file format and improve file format documentation by @app/copilot-swe-agent in #623
• Deprecate OpenMS experimental design format, enforce SDRF-only input by @app/copilot-swe-agent in #639
• Enable ext.args support in GENERATE_CFG module by @app/copilot-swe-agent in #641
• Bump version to new release cycle. Add SDRF agent skill by @jpfeuffer in #643
• strict syntax (Nextflow 26 compatibility) by @jpfeuffer in #644
• Resolve quantms issue 650 - remove unnecessary params, present in SDRF by @ypriverol in #651
• Handling DIANN parameters to get extended parameters to modules validated by @ypriverol in #660
• Fix .d file support and Nextflow 26 issues by @jpfeuffer in #676
• Update schema by @enryH in #679
• Bump quantms-rescoring version - fix container permissions by @daichengxin in #681
• Update to fetch SDRF and FASTA files from maintained repo by @enryH in #686
• Integrate thermorawfileparser module from nf-core/bigbio modules by @enryH in #687
• Fix typo in openms_peak_picker processOption value by @app/copilot-swe-agent in #689
• Expose FDR conservative parameter by @ypriverol in #690
• Expose Biosaur2 as alternative feature seeding algorithm for LFQ by @ypriverol in #694
• Fix Comet version reporting in pmultiqc software table by @app/copilot-swe-agent in #699
• Remove MSstats post-processing step from quantms by @ypriverol in #701
• Remove DIA-NN workflow, redirect to quantmsdiann by @ypriverol in #702
• Remove ms2features_range modes and IDRipper by @ypriverol in #706
• Remove ConsensusID module and migrate to parquet-based processing by @daichengxin in #708
• Update onsite module by @daichengxin in #709

Full Changelog: 1.7.0...1.8.0