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chore(backend)(deps): bump the python-dependencies group in /backend with 10 updates #389

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chore(backend)(deps): bump the python-dependencies group in /backend with 10 updates #389

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4 changes: 2 additions & 2 deletions backend/pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -52,15 +52,15 @@ rag = [

[dependency-groups]
dev = [
"ruff==0.15.17",
"ruff==0.15.18",
"mypy==2.1.0",
"types-jsonschema>=4.25.1.20250822",
"types-pyyaml>=6.0.12.20260408", # Type stubs for PyYAML
"types-redis>=4.6.0", # Type stubs for Redis
]
test = [
"ga4gh-vrs>=2.1.3",
"pytest==9.1.0",
"pytest==9.1.1",
"pytest-asyncio>=1.2.0", # Updated for pytest 8.x compatibility (0.21.1 incompatible)
"pytest-cov==7.1.0",
"pytest-xdist>=3.6.0", # Parallel test execution with per-worker DB isolation
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4 changes: 2 additions & 2 deletions backend/requirements-dev.txt
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Expand Up @@ -5,10 +5,10 @@
-r requirements.txt

# Development tools (from [dependency-groups.dev])
ruff==0.15.17
ruff==0.15.18
mypy==2.1.0

# Testing (from [dependency-groups.test])
pytest==9.1.0
pytest==9.1.1
pytest-asyncio==1.4.0
pytest-cov==7.1.0
16 changes: 8 additions & 8 deletions backend/requirements.txt
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Expand Up @@ -6,15 +6,15 @@ aiohttp==3.14.1
# via hnf1b-api (pyproject.toml)
aiosignal==1.4.0
# via aiohttp
aiosmtplib==5.1.1
aiosmtplib==5.1.2
# via hnf1b-api (pyproject.toml)
alembic==1.18.4
# via hnf1b-api (pyproject.toml)
annotated-doc==0.0.4
# via fastapi
annotated-types==0.7.0
# via pydantic
anyio==4.13.0
anyio==4.14.0
# via
# httpx
# starlette
Expand All @@ -37,7 +37,7 @@ bioutils==0.6.1
# via ga4gh-vrs
canonicaljson==2.0.0
# via ga4gh-vrs
certifi==2026.5.20
certifi==2026.6.17
# via
# httpcore
# httpx
Expand All @@ -54,7 +54,7 @@ dnspython==2.8.0
# via email-validator
email-validator==2.3.0
# via hnf1b-api (pyproject.toml)
fastapi==0.137.1
fastapi==0.138.0
# via hnf1b-api (pyproject.toml)
fastobo==0.14.1
# via pronto
Expand All @@ -64,7 +64,7 @@ frozenlist==1.8.0
# aiosignal
ga4gh-vrs==2.3.3
# via hnf1b-api (pyproject.toml)
greenlet==3.5.1
greenlet==3.5.2
# via sqlalchemy
h11==0.16.0
# via
Expand Down Expand Up @@ -135,9 +135,9 @@ pydantic==2.13.4
# fastapi
# ga4gh-vrs
# pydantic-settings
pydantic-core==2.46.4
pydantic-core==2.47.0
# via pydantic
pydantic-settings==2.14.1
pydantic-settings==2.14.2
# via hnf1b-api (pyproject.toml)
pyjwt==2.13.0
# via hnf1b-api (pyproject.toml)
Expand Down Expand Up @@ -175,7 +175,7 @@ scipy==1.17.1
# via hnf1b-api (pyproject.toml)
six==1.17.0
# via python-dateutil
sqlalchemy==2.0.50
sqlalchemy==2.0.51
# via
# hnf1b-api (pyproject.toml)
# alembic
Expand Down