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Add check for paired reads #19

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Merged
BioWilko merged 3 commits into from
Aug 28, 2025
Merged

Add check for paired reads #19

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e559d51
Add check for paired reads
ChrisgKent Aug 28, 2025
b0319ff
Bump version from 1.0.1 to 1.0.2
BioWilko Aug 28, 2025
19bb6eb
Update uv lock
BioWilko Aug 28, 2025
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3 changes: 2 additions & 1 deletion align_trim/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -372,7 +372,8 @@ def handle_segments(
)

if not p1 or not p2:
segment = segment1 if segment1 else segment2
if paired:
segment = segment1 if segment1 else segment2
if args.verbose:
print(
f"{segment.query_name}: skipped as no primer found for segment",
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