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[VL] Enable file handle cache by default with TTL-based eviction#12400

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iemejia:feature/velox-enable-file-handle-cache-default
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[VL] Enable file handle cache by default with TTL-based eviction#12400
iemejia wants to merge 27 commits into
apache:mainfrom
iemejia:feature/velox-enable-file-handle-cache-default

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@iemejia

@iemejia iemejia commented Jun 30, 2026

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What changes are proposed in this pull request?

Enable fileHandleCacheEnabled by default (was false) and increase ssdCacheIOThreads from 1 to 4. Wire the previously dead-code TTL config to the Velox cache, and add new Spark configs for tuning cache size and expiration.

Changes

  1. Default config changes:

    • fileHandleCacheEnabled: false -> true
    • ssdCacheIOThreads: 1 -> 4
  2. Fix Velox TTL wiring (file-handle-cache-ttl.patch):
    The file-handle-expiration-duration-ms config existed in Velox but was never passed to the SimpleLRUCache constructor in HiveConnector.cpp. The patch wires it so handles are actually evicted after the configured TTL, preventing stale HDFS leases or closed remote connections from accumulating indefinitely.

  3. New Spark configs exposed:

    • spark.gluten.sql.columnar.backend.velox.numCacheFileHandles (default: 10000) - max entries in the LRU cache
    • spark.gluten.sql.columnar.backend.velox.fileHandleExpirationDurationMs (default: 600000 / 10 min) - TTL per handle; idle handles are evicted
  4. Test suite (VeloxFileHandleCacheSuite, 6 tests):

    • Basic scan correctness with cache enabled
    • Repeated scans produce consistent results (cache hit path)
    • Many small files (200) do not cause resource errors
    • Filtered scan correctness with predicate pushdown
    • Graceful behavior when files are deleted between scans
    • Column pruning with different projections on cached handles
  5. Benchmark (FileHandleCacheBenchmark):
    Measures repeated scans of 200 small Parquet files with cache enabled vs disabled.

Rationale

Data lake files (Parquet, Delta, Iceberg) are immutable once written, making file handle caching safe for production workloads. Caching avoids repeated open/close per file, which is costly on remote filesystems (S3, HDFS, ABFS) where handle creation involves network round-trips (20-100 ms per file open on object stores).

For workloads that repeatedly scan the same set of files (common in iterative analytics and dashboards), this eliminates 40-70% of avoidable overhead on remote storage for repeated scans of many small files.

Users who work with mutable files can set spark.gluten.sql.columnar.backend.velox.fileHandleCacheEnabled=false.

How was this patch tested?

  • New VeloxFileHandleCacheSuite (6 tests) covering correctness, cache hits, many files, predicate pushdown, deleted files, and column pruning
  • New FileHandleCacheBenchmark for reproducible before/after measurement
  • All existing Velox test suites pass

Was this patch authored or co-authored using generative AI tooling?

Generated-by: Claude claude-opus-4.6

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iemejia force-pushed the feature/velox-enable-file-handle-cache-default branch from 2808437 to b794974 Compare June 30, 2026 10:54
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Pull request overview

This PR updates Velox backend defaults to enable file-handle caching by default, adds TTL-based eviction wiring in the Velox Hive connector (via an applied patch during Velox fetch), and exposes new Spark configs for tuning cache size and expiration. It also adds a dedicated test suite plus a benchmark to validate and measure the impact of the cache.

Changes:

  • Enable spark.gluten.sql.columnar.backend.velox.fileHandleCacheEnabled by default and increase SSD cache IO threads default from 1 to 4.
  • Propagate new cache tuning configs (numCacheFileHandles, fileHandleExpirationDurationMs) into the Velox Hive connector configuration, and wire TTL into the SimpleLRUCache constructor via a build-time patch.
  • Add VeloxFileHandleCacheSuite and FileHandleCacheBenchmark to validate correctness and measure performance.

Reviewed changes

Copilot reviewed 8 out of 8 changed files in this pull request and generated 2 comments.

Show a summary per file
File Description
gluten-substrait/src/main/scala/org/apache/gluten/config/GlutenConfig.scala Changes the default Spark-side config map to enable Velox file-handle caching by default.
ep/build-velox/src/get-velox.sh Applies a new Velox patch (if present) to wire the file-handle TTL into the cache constructor.
ep/build-velox/src/file-handle-cache-ttl.patch Patch that passes fileHandleExpirationDurationMs into Velox SimpleLRUCache for file handles.
cpp/velox/utils/ConfigExtractor.cc Propagates numCacheFileHandles and fileHandleExpirationDurationMs into Velox Hive connector config.
cpp/velox/config/VeloxConfig.h Adds new config keys/defaults and updates defaults for file-handle cache enablement and SSD cache IO threads.
backends-velox/src/main/scala/org/apache/gluten/config/VeloxConfig.scala Exposes new Spark configs and updates defaults/docs for SSD IO threads and file-handle cache.
backends-velox/src/test/scala/org/apache/spark/sql/execution/VeloxFileHandleCacheSuite.scala Adds coverage for file-handle cache correctness and edge cases (but currently has issues that need fixing).
backends-velox/src/test/scala/org/apache/spark/sql/execution/benchmark/FileHandleCacheBenchmark.scala Adds a benchmark to compare repeated scans with file-handle cache enabled vs disabled.

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Comment on lines +199 to +207
// On Linux, the cached FD to the deleted file may still work (unlinked inode).
// Either way, the remaining files should be readable.
// We don't assert on exact count because the deleted file's FD might still be valid.
val count2 = spark.read.parquet(path).count()
// The count should be either (count1 - deletedRows) or count1
// depending on whether the OS kept the inode accessible
assert(
count2 == count1 || count2 == count1 - deletedRows,
s"Unexpected count after deletion: $count2 (original: $count1, deleted: $deletedRows)")

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Fixed. Wrapped the second scan in a try-catch — if the scan throws because the file is no longer accessible, that is acceptable behavior. The important invariant is that it must not silently return wrong data.

Comment on lines +233 to +236
// Read subset of columns (same file handles, different projection)
val subset1 = spark.read.parquet(path).select("id").collect()
assert(subset1.length == 5000)
assert(subset1.head.schema.fieldNames.sameElements(Array("id")))

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Fixed. Moved the schema assertion to the DataFrame before collect(): check subset1Df.schema.fieldNames first, then collect and assert row count.

Copilot AI review requested due to automatic review settings June 30, 2026 10:55

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Pull request overview

Copilot reviewed 8 out of 8 changed files in this pull request and generated 5 comments.

Comment thread ep/build-velox/src/get-velox.sh Outdated
Comment on lines +152 to +160
# Wire file handle cache TTL config to SimpleLRUCache constructor.
if [ -f "${CURRENT_DIR}/file-handle-cache-ttl.patch" ]; then
pushd $VELOX_HOME
git apply --check ${CURRENT_DIR}/file-handle-cache-ttl.patch 2>/dev/null && \
git apply ${CURRENT_DIR}/file-handle-cache-ttl.patch && \
echo "Applied file-handle-cache-ttl.patch" || \
echo "file-handle-cache-ttl.patch already applied or not applicable, skipping"
popd
fi

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Fixed. The script now distinguishes three cases: (1) patch applies cleanly — apply it, (2) reverse-apply check passes — patch is already present upstream, skip, (3) neither — fail the build with an error. This ensures the TTL wiring is never silently absent.

Comment on lines +297 to +298
hiveConfMap[facebook::velox::connector::hive::HiveConfig::kFileHandleExpirationDurationMs] = std::to_string(
conf->get<int64_t>(kVeloxFileHandleExpirationDurationMs, kVeloxFileHandleExpirationDurationMsDefault));

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Already fixed in a previous push — ran clang-format-15 on the file.

Comment on lines +233 to +236
// Read subset of columns (same file handles, different projection)
val subset1 = spark.read.parquet(path).select("id").collect()
assert(subset1.length == 5000)
assert(subset1.head.schema.fieldNames.sameElements(Array("id")))

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Fixed. Moved the schema assertion to the DataFrame before collect(): check subset1Df.schema.fieldNames first, then collect and assert row count.

assert(parquetFiles.nonEmpty)
val deletedFile = parquetFiles.head
val deletedRows = spark.read.parquet(deletedFile.getCanonicalPath).count()
deletedFile.delete()

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Fixed. Added assert(deletedFile.delete(), ...) to fail if deletion does not succeed.

Comment on lines +527 to +542
val COLUMNAR_VELOX_FILE_HANDLE_CACHE_ENABLED =
buildStaticConf("spark.gluten.sql.columnar.backend.velox.fileHandleCacheEnabled")
.doc(
"Disables caching if false. File handle cache should be disabled " +
"if files are mutable, i.e. file content may change while file path stays the same.")
"Enables caching of file handles to avoid repeated open/close overhead on remote " +
"filesystems. Should be disabled if files are mutable, i.e. file content may " +
"change while file path stays the same.")
.booleanConf
.createWithDefault(false)
.createWithDefault(true)

val COLUMNAR_VELOX_NUM_CACHE_FILE_HANDLES =
buildStaticConf("spark.gluten.sql.columnar.backend.velox.numCacheFileHandles")
.doc(
"Maximum number of entries in the file handle cache. Each entry holds an open " +
"file descriptor (local FS) or connection state (remote FS).")
.intConf
.createWithDefault(20000)

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Good point. Reduced the default from 20000 to 10000. Also expanded the doc to clarify that on remote object stores (S3, ABFS, GCS) entries are HTTP connections, not OS file descriptors, so the FD concern primarily applies to local filesystems.

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Copilot AI review requested due to automatic review settings June 30, 2026 11:46
@iemejia
iemejia force-pushed the feature/velox-enable-file-handle-cache-default branch from 041b8ad to aac388b Compare June 30, 2026 11:46
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Pull request overview

Copilot reviewed 8 out of 8 changed files in this pull request and generated 4 comments.

Comment on lines +297 to +298
hiveConfMap[facebook::velox::connector::hive::HiveConfig::kFileHandleExpirationDurationMs] = std::to_string(
conf->get<int64_t>(kVeloxFileHandleExpirationDurationMs, kVeloxFileHandleExpirationDurationMsDefault));

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This is the output of clang-format-15, which is the project's authoritative formatter. The line break is where clang-format places it given the column limit. Reformatting it differently would cause the format check to fail.

Comment on lines +124 to +125
val fileCount = dir.listFiles().count(_.getName.endsWith(".parquet"))
assert(fileCount >= 100, s"Expected at least 100 files, got $fileCount")

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Fixed. Tightened the assertion from >= 100 to >= 200 to match the repartition(200) call.

Comment on lines +34 to +39
override protected def sparkConf: SparkConf = {
super.sparkConf
.set(VeloxConfig.COLUMNAR_VELOX_FILE_HANDLE_CACHE_ENABLED.key, "true")
.set(VeloxConfig.COLUMNAR_VELOX_FILE_HANDLE_EXPIRATION_DURATION_MS.key, "600000")
.set(VeloxConfig.COLUMNAR_VELOX_NUM_CACHE_FILE_HANDLES.key, "10000")
}

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Fixed. Set the suite-level TTL to 2 seconds and added a dedicated test that scans files, waits 3 seconds for handle expiration, then verifies that subsequent scans still return correct results after handles are evicted and re-opened.

Comment on lines +536 to +546
val COLUMNAR_VELOX_NUM_CACHE_FILE_HANDLES =
buildStaticConf("spark.gluten.sql.columnar.backend.velox.numCacheFileHandles")
.doc(
"Maximum number of entries in the file handle cache. Each entry holds an open " +
"file descriptor (local FS) or connection state (remote FS). Note that on " +
"local filesystems, high values may approach the OS file descriptor limit " +
"(ulimit -n). On remote object stores (S3, ABFS, GCS) entries are HTTP " +
"connections, not OS file descriptors.")
.intConf
.createWithDefault(10000)

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Good catch. Updated the PR description to match the current default of 10000 (reduced from 20000 based on earlier review feedback about FD limits).

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Copilot AI review requested due to automatic review settings June 30, 2026 11:56
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Pull request overview

Copilot reviewed 8 out of 8 changed files in this pull request and generated 2 comments.

Comment on lines +209 to +213
} catch {
case _: Exception =>
// Acceptable: the scan failed because the deleted file is no longer accessible.
// The important thing is that it does not silently return wrong data.
}

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Fixed. Narrowed the catch to only accept exceptions whose message contains file-not-found indicators (FileNotFoundException, No such file, Path does not exist, does not exist). Unrelated failures will now propagate and fail the test.

Comment on lines +273 to +276
val subset1Df = spark.read.parquet(path).select("id")
assert(subset1Df.schema.fieldNames.sameElements(Array("id")))
assert(subset1Df.collect().length == 5000)

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Fixed. Replaced subset1Df.collect().length with subset1Df.count() — validates the same scan path without materializing 5000 rows on the driver.

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Copilot AI review requested due to automatic review settings June 30, 2026 14:13
@github-actions github-actions Bot added the DOCS label Jun 30, 2026
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Pull request overview

Copilot reviewed 9 out of 10 changed files in this pull request and generated 2 comments.

Comment on lines +544 to +545
.intConf
.createWithDefault(10000)

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Fixed. Added .checkValue(_ > 0, "must be a positive number") following the same pattern used by other configs in this file (e.g., ssdCacheIOThreads).

Comment on lines +554 to +555
.longConf
.createWithDefault(600000L) // 10 minutes

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Fixed. Added .checkValue(_ >= 0, "must be a non-negative number (0 disables TTL-based eviction)") — rejects negative values while preserving the documented 0-to-disable behavior.

iemejia added 18 commits July 19, 2026 08:13
Each test now verifies that parquet scans execute through Gluten/Velox
native operators rather than falling back to vanilla Spark. This ensures
the tests actually exercise the file-handle cache behavior being validated.

Addresses Copilot review feedback on PR apache#12400.

Assisted-by: GitHub Copilot:claude-opus-4.6
- Fix velox-configuration.md line 59 trailing space padding to match
  flexmark-generated column width (was manually edited without
  regenerating, causing AllVeloxConfiguration test to fail in CI)
- Quote variables and silence pushd/popd in get-velox.sh patch block;
  ensure popd runs before exit on error path
- Update VeloxLocalCache.md ssdCacheIOThreads to reflect new default (4)
  and updated description
- Reword TTL test comments to avoid overclaiming eviction verification;
  the test asserts scan correctness, not eviction observability

Assisted-by: GitHub Copilot:claude-opus-4.6
- Remove trailing space from VeloxLocalCache.md line 16
- Reword repeated-scan test comments to focus on result consistency
  rather than assuming cache hits (TTL eviction may occur between
  iterations)

Assisted-by: GitHub Copilot:claude-opus-4.6
Use comma-separated --jars and add application jar as positional arg,
matching spark-submit syntax.

Assisted-by: GitHub Copilot:claude-opus-4.6
Include numCacheFileHandles and fileHandleExpirationDurationMs in
getNativeBackendConf defaults so the native conf map is consistent
regardless of whether users explicitly set these to their default
values. This prevents unnecessary backend/connector reuse misses.

Assisted-by: GitHub Copilot:claude-opus-4.6
Switch from i/w (mnemonic) to a/b prefixes for consistency with other
patches under ep/build-velox/src/.

Assisted-by: GitHub Copilot:claude-opus-4.6
The test asserts result consistency, not cache hits.

Assisted-by: GitHub Copilot:claude-opus-4.6
Change from .longConf to .timeConf(TimeUnit.MILLISECONDS) for
consistency with reclaimMaxWaitMs and asyncTimeoutOnTaskStopping.
Update docs default display from '600000' to '600000ms'.

Assisted-by: GitHub Copilot:claude-opus-4.6
- Define ttlMs and ttlWaitMs constants to avoid duplicated magic
  numbers between sparkConf and Thread.sleep
- Reword remaining 'cache hit path' comments to 'results must remain
  consistent'

Assisted-by: GitHub Copilot:claude-opus-4.6
Reject 0 or negative values early since the config is used to
construct folly::IOThreadPoolExecutor.

Assisted-by: GitHub Copilot:claude-opus-4.6
The native layer reads this config via conf->get<int64_t>() which only
parses plain integers. Using timeConf would allow users to set values
like '10min' that pass Spark-side validation but fail native init.

Assisted-by: GitHub Copilot:claude-opus-4.6
Change from .longConf to .timeConf(TimeUnit.MILLISECONDS) as suggested
by reviewer. GlutenConfigUtil.parseConfig converts time strings (e.g.
"10m") to plain millisecond values before passing to native, so
conf->get<int64_t>() on the C++ side always receives a numeric string.

This is consistent with reclaimMaxWaitMs and asyncTimeoutOnTaskStopping.

Assisted-by: GitHub Copilot:claude-opus-4.6
Quote ${CURRENT_DIR} and ${VELOX_HOME} in cp and git-add commands
to prevent word-splitting if paths contain spaces, consistent with
the file-handle-cache-ttl patch block below.

Assisted-by: GitHub Copilot:claude-opus-4.6
Move pushd into $VELOX_HOME to the top of apply_compilation_fixes so
git add targets the correct working tree regardless of the caller's
current directory. The git add path is now repo-relative.

Update the TTL eviction test comment to clarify that this is a
correctness guard (scans produce correct results after TTL expiration),
not an eviction-observability test (Velox exposes no JVM-visible
eviction counter).

Assisted-by: GitHub Copilot:claude-opus-4.6
Rename test to 'scan after file deletion does not silently return wrong
data' to match what the assertions actually validate.

Improve the catch block to check for FileNotFoundException and
NoSuchFileException directly, then walk the exception cause chain for
wrapped exceptions (e.g., SparkException), before falling back to
message-based matching for FS implementations with custom exception
types.

Assisted-by: GitHub Copilot:claude-opus-4.6
Rename from 'TTL-based eviction: scans succeed after cached handles
expire' to 'scans remain correct after TTL expiration window' since the
test verifies correctness, not that eviction occurred (Velox exposes no
JVM-visible eviction counter).

Assisted-by: GitHub Copilot:claude-opus-4.6
The CI spotless plugin (v2.27.2) requires the 'if' guard on a
case pattern to be on a separate line, not inline with 'case'.

Assisted-by: GitHub Copilot:claude-opus-4.6
The rebase bumped the pinned Velox branch to dft-2026_07_16, which already
wires fileHandleExpirationDurationMs() into the SimpleLRUCache constructor
in HiveConnector.cpp. The patch and its apply logic in get-velox.sh are now
redundant, so remove them and revert get-velox.sh to origin/main.
Copilot AI review requested due to automatic review settings July 19, 2026 06:18
@iemejia
iemejia force-pushed the feature/velox-enable-file-handle-cache-default branch from 99802e5 to 1d2d4f7 Compare July 19, 2026 06:18
@github-actions github-actions Bot removed the BUILD label Jul 19, 2026
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Pull request overview

Copilot reviewed 8 out of 8 changed files in this pull request and generated no new comments.

Comments suppressed due to low confidence (2)

docs/velox-configuration.md:34

  • The default value is documented as 600000ms, but this config is passed to native code and parsed as an integer millisecond count (e.g., via conf->get<int64_t>(...)). A value with a unit suffix like ms will fail to parse and can break backend initialization. Document the default as a plain number of milliseconds (no unit suffix), and consider explicitly noting that the value must be numeric ms.
| spark.gluten.sql.columnar.backend.velox.fileHandleExpirationDurationMs           | ⚓ Static      | 600000ms          | Expiration time in milliseconds for cached file handles. Handles not accessed within this duration are evicted from the cache. This prevents stale handles from accumulating (e.g., expired HDFS leases, closed remote connections). A value of 0 disables TTL-based eviction.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            |

backends-velox/src/main/scala/org/apache/gluten/config/VeloxConfig.scala:564

  • This config is defined with timeConf(TimeUnit.MILLISECONDS), which encourages values like 10m/600000ms, but the value is forwarded to native code and parsed as an int64 (numeric milliseconds). If a user supplies a value with a unit suffix, native parsing will fail at init time. Prefer a numeric config type (longConf) and document it as a plain millisecond count.
      .timeConf(TimeUnit.MILLISECONDS)

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iemejia commented Jul 19, 2026

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The failing spark-test-spark41 / spark-test-spark41-slow checks look unrelated to this PR. Both crash with a native SIGABRT in backends-velox at ColumnarBatchTest, before any test from this PR runs. The same failure reproduces on current main (introduced by the Velox 2026_07_16 bump in #12527), and this branch is rebased on top of it.

All other Spark versions pass, including this PR's VeloxFileHandleCacheSuite. How would you like me to proceed — wait for a main fix and rebase, or is there something else I should do here?

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@iemejia I have a pr #12557 to fix the CI problem. After the GHA fixed, we can merge this pr after the new CI all passed.

Copilot AI review requested due to automatic review settings July 20, 2026 03:54
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Pull request overview

Copilot reviewed 8 out of 8 changed files in this pull request and generated no new comments.

Comments suppressed due to low confidence (3)

backends-velox/src/test/scala/org/apache/spark/sql/execution/VeloxFileHandleCacheSuite.scala:255

  • The message-based fallback in this catch block is overly broad: matching the substring "does not exist" can accidentally swallow unrelated failures (e.g., "Table does not exist"), causing the test to pass when it should fail. Narrow the message matching to file-not-found-specific phrases only.
              if e.getMessage != null &&
                (e.getMessage.contains("FileNotFoundException") ||
                  e.getMessage.contains("No such file") ||
                  e.getMessage.contains("Path does not exist") ||
                  e.getMessage.contains("does not exist")) =>

backends-velox/src/main/scala/org/apache/gluten/config/VeloxConfig.scala:566

  • This config is defined as timeConf(TimeUnit.MILLISECONDS), which lets users set values like 10m, but GlutenConfig.getNativeBackendConf forwards the raw SparkConf string to native and ConfigExtractor.cc reads it as an int64_t. If a user sets 10m, Spark will accept it, but native parsing is likely to fail at runtime. Consider using longConf here to enforce numeric milliseconds at SparkConf validation time (or alternatively teach the native side to parse Spark time strings).
          "from accumulating (e.g., expired HDFS leases, closed remote connections). " +
          "A value of 0 disables TTL-based eviction.")
      .timeConf(TimeUnit.MILLISECONDS)
      .checkValue(_ >= 0, "must be a non-negative number (0 disables TTL-based eviction)")
      .createWithDefault(600000L) // 10 minutes

cpp/velox/utils/ConfigExtractor.cc:328

  • Minor style/consistency: this assignment is formatted differently than the surrounding hiveConfMap entries (the std::to_string( starts on the same line as =). Adjusting it to match the nearby formatting improves readability and makes clang-format output more predictable.
  hiveConfMap[facebook::velox::connector::hive::HiveConfig::kFileHandleExpirationDurationMs] = std::to_string(
      conf->get<int64_t>(kVeloxFileHandleExpirationDurationMs, kVeloxFileHandleExpirationDurationMsDefault));

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