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[Bug] get_tss_annotation_from_ensembl produces pyarrow.lib.ArrowTypeError when chromosome column contains mixed types

Status: Open.

#229 In aertslab/pycisTopic;

· BDBGenomics opened on May 22, 2026

ValueError: Unable to determine Axes to steal space for Colorbar. Either provide the *cax* argument to use as the Axes for the Colorbar, provide the *ax* argument to steal space from it, or add *mappable* to an Axes.

Status: Open.

#224 In aertslab/pycisTopic;

· danli349 opened on Feb 11, 2026

PanicException: called Result::unwrap() on an Err value: ParseIntError { kind: InvalidDigit }

Status: Open.

#221 In aertslab/pycisTopic;

· danli349 opened on Dec 23, 2025

pycistopic pyarrow.lib.ArrowTypeError: Expected bytes, got a 'int' object

Status: Open.

#219 In aertslab/pycisTopic;

· danli349 opened on Dec 17, 2025

Bug report [BUG] export_pseudobulk using new cellranger-arc v2.1 fragment files

Status: Open.

#217 In aertslab/pycisTopic;

· mariefbourdon opened on Dec 12, 2025

Bug report [BUG] Tutorial throws pyarrow.lib.ArrowTypeError: Expected bytes, got a 'int' object

Status: Open.

#215 In aertslab/pycisTopic;

· arne-cl opened on Sep 19, 2025

Bug report [BUG]: Unable to export region accessibility to loom TypeError: Object dtype dtype('O') has no native HDF5 equivalent

Status: Open.

#214 In aertslab/pycisTopic;

· jjia1 opened on Sep 12, 2025

Bug Report: OutOfMemoryError (“GC overhead limit exceeded”) when running topic modeling with Mallet

Status: Open.

#213 In aertslab/pycisTopic;

· teng-gao opened on Jul 25, 2025

Guidance on V3 branch

Status: Open.

#212 In aertslab/pycisTopic;

· jjia1 opened on Jul 24, 2025

Bug report [BUG] - pycisTopic QC

Status: Open.

#210 In aertslab/pycisTopic;

· TheeJonas opened on Jun 19, 2025

KeyError in cell_topic_heatmap [BUG]

Status: Open.

#209 In aertslab/pycisTopic;

· daniel-nebdal opened on May 26, 2025

Error in topic binarization after topic modeling with polars_1xx branch

Status: Open.

#206 In aertslab/pycisTopic;

· Sebdumas opened on Mar 17, 2025