ECM simulations

A collection of scripts for computing eigenfunctions on geometrical models of C elegans embryos using NGSolve.

Setup

Install uv, then create the environment:

uv sync

Then, you should be able to run the examples using:

uv run python <filename>  # just console output, no GUI
uv run netgen <filename>  # console output and GUI

The .py scripts in the scripts/ directory are text representations of notebook files courtesy of jupytext. When you open them in jupyter (right-click and choose 'Open With > Jupytext notebook'), they will be automatically converted to interactive notebooks, which you can find in the notebooks/ directory. Saving a notebook will also automatically update the associated .py file.