Issues · DataBiosphere/toil · GitHub

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Running CWL docs mention a logDir, but I cannot find that argument?

#5538

· kinow opened

on Jun 13, 2026

`--cwl-min-ram` help is confusing: make us add Toil overhead

#5535

· adamnovak opened

on Jun 9, 2026

WDL quickstart example in the documentation lacks a `version`, so it won't work (and isn't under test)

#5534

· adamnovak opened

on Jun 9, 2026

Don't count image pulls towards CWL `ToolTimeLimit`

#5533

· adamnovak opened

on Jun 4, 2026

Make Toil set `CWL_SINGULARITY_CACHE` if not set for CWL workflows

#5532

· adamnovak opened

on Jun 4, 2026

`toil-cwl-runner` should allow `http://commonwl.org/cwltool#` namespaced extensions by default

#5531

· adamnovak opened

on Jun 3, 2026

Improve MiniWDL WDL 1.2 support

#5527

· unito-bot opened

on May 29, 2026

`src/toil/lib/encryption/_nacl.py::toil.lib.encryption._nacl.decrypt` test is flaky

#5521

· adamnovak opened

on May 19, 2026

Setting up where Toil puts things is confusing

#5516

· unito-bot opened

on May 7, 2026

Retry when Docker has internal timeouts behind MiniWDL

#5511

· adamnovak opened

on May 4, 2026

README does not provide an obvious link to the right citation, or a machine-readable version of it

#5509

· kinow opened

on May 1, 2026

Toil should recognize when workflows not run by TRS ID have a TRS ID assigned, and associate it woth the workflow

#5504

· adamnovak opened

on Apr 29, 2026