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add dataset differentiation in snakemake report
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Lines changed: 16 additions & 5 deletions

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workflow/rules/4.3_positive_selection_scikit-allel.smk

Lines changed: 16 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -92,7 +92,10 @@ rule plot_tajima_d:
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"results/positive_selection/scikit-allel/{species}/{dataset}/1pop/{ppl}/{method}/{window}_{step}/{ppl}.{method}.top_{cutoff}.scores.png",
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category="Positive Selection",
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subcategory="{method}",
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labels=lambda wildcards: tajima_d_labels(wildcards, type="Manhattan Plot"),
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labels=lambda wildcards: {
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"Dataset": wildcards.dataset,
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**tajima_d_labels(wildcards, type="Manhattan Plot"),
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},
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),
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params:
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title=add_scikit_allel_title,
@@ -188,7 +191,10 @@ rule tajima_d_outlier_genes_table_html:
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"results/positive_selection/scikit-allel/{species}/{dataset}/1pop/{ppl}/{method}/{window}_{step}/{ppl}.{method}.top_{cutoff}.outlier.genes.html",
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category="Positive Selection",
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subcategory="{method}",
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labels=lambda wildcards: tajima_d_labels(wildcards, type="Gene List"),
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labels=lambda wildcards: {
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"Dataset": wildcards.dataset,
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**tajima_d_labels(wildcards, type="Gene List"),
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},
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),
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params:
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title=add_scikit_allel_title,
@@ -255,8 +261,10 @@ rule tajima_d_enrichment_results_table_html:
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"results/positive_selection/scikit-allel/{species}/{dataset}/1pop/{ppl}/{method}/{window}_{step}/{ppl}.{method}.top_{cutoff}.gowinda.enrichment.html",
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category="Positive Selection",
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subcategory="{method}",
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labels=lambda wildcards: tajima_d_labels(
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wildcards, type="Enrichment Table"),
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labels=lambda wildcards: {
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"Dataset": wildcards.dataset,
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**tajima_d_labels(wildcards, type="Enrichment Table"),
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},
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),
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params:
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title=add_scikit_allel_title,
@@ -276,7 +284,10 @@ rule plot_gowinda_enrichment_tajima_d:
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"results/positive_selection/scikit-allel/{species}/{dataset}/1pop/{ppl}/{method}/{window}_{step}/{ppl}.{method}.top_{cutoff}.gowinda.enrichment.png",
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category="Positive Selection",
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subcategory="{method}",
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labels=lambda wildcards: tajima_d_labels(wildcards, type="Enrichment Plot"),
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labels=lambda wildcards: {
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"Dataset": wildcards.dataset,
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**tajima_d_labels(wildcards, type="Enrichment Plot"),
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},
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),
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params:
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title=add_scikit_allel_title,

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