selscape/.github/workflows/build.yaml at a6f2a2bcdb3c87fc929fffaa3ade8b09b9968f51 · xin-huang/selscape · GitHub

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name: Tests
on: [push, pull_request]
jobs:
  Testing_dry_run:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Test workflow syntax (dry run)
      uses: snakemake/snakemake-github-action@v1.25.1
      with:
        directory: .
        snakefile: workflow/Snakefile
        args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda"
        stagein: "conda config --set channel_priority strict"

  Testing_human_minimal:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Test workflow (Human chr22 only) - dry run
      uses: snakemake/snakemake-github-action@v1.25.1
      with:
        directory: .
        snakefile: workflow/Snakefile
        args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda"

  Testing_selscan_module:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Test Selscan module - dry run
      uses: snakemake/snakemake-github-action@v1.25.1
      with:
        directory: .
        snakefile: workflow/Snakefile
        args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda --until merge_selscan_scores"

  Testing_betascan_module:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Test Betascan module - dry run
      uses: snakemake/snakemake-github-action@v1.25.1
      with:
        directory: .
        snakefile: workflow/Snakefile
        args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda --until merge_b1_scores"