remove chr prefix from positive selection rules #325
Workflow file for this run
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| name: Tests | |
| on: [push, pull_request] | |
| jobs: | |
| Testing_dry_run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Test workflow syntax (dry run) | |
| uses: snakemake/snakemake-github-action@v1.25.1 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda" | |
| stagein: "conda config --set channel_priority strict" | |
| Testing_human_minimal: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Test workflow (Human chr22 only) - dry run | |
| uses: snakemake/snakemake-github-action@v1.25.1 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda" | |
| Testing_selscan_module: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Test Selscan module - dry run | |
| uses: snakemake/snakemake-github-action@v1.25.1 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda --until merge_selscan_scores" | |
| Testing_betascan_module: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Test Betascan module - dry run | |
| uses: snakemake/snakemake-github-action@v1.25.1 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .tests/ci/config/main.yaml --use-conda --show-failed-logs -j 2 --dry-run --conda-frontend conda --until merge_b1_scores" |