chore(deps): update dependencies and pre-commit hooks (#276)

Author: wpk-nist-gov

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: v0.13.0-50-g25df1385
+_commit: v0.13.0-57-g947185a1
 _src_path: .
 command_line_interface: none
 conda_channel: wpk-nist

.pre-commit-config.yaml

@@ -58,7 +58,7 @@ repos:
       - id: taplo-lint
         args: ["--no-schema"]
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.24.1
+    rev: v2.25.0
     hooks:
       - id: pyproject-fmt
   # ** validate (schema-store)
@@ -96,7 +96,7 @@ repos:
 
   # Just
   - repo: https://github.com/wpk-nist-gov/just-pre-commit
-    rev: v1.52.0
+    rev: v1.53.0
     hooks:
       - id: justfile-format
 

pyproject.toml

@@ -190,13 +190,13 @@ exclude = [
     ".venv/**",
 ]
 enableTypeIgnoreComments = false
-# options
-# reportMissingSuperCall = true
 deprecateTypingAliases = true
 reportCallInDefaultInitializer = true
 reportImplicitOverride = true
 reportImplicitStringConcatenation = false
 reportImportCycles = true
+# options
+# reportMissingSuperCall = true
 reportOverlappingOverload = true
 reportPrivateImportUsage = false
 reportPrivateUsage = false
@@ -211,6 +211,12 @@ reportUnusedImport = false
 reportUnusedVariable = false
 enableReachabilityAnalysis = false
 
+# strict = [
+#     "src",
+#     "tests",
+#     "noxfile.py",
+#     "tools/*.py",
+# ]
 [[tool.pyright.executionEnvironments]]
 root = "tests"
 # reportCallIssue = false
@@ -319,17 +325,17 @@ pip-deps = [
     "copier>=9.15.2",
     "grayskull>=3.1.1",
     "prek>=0.4.5",
-    "pyrefly>=1.0.0",
+    "pyrefly>=1.1.0",
     "pyright>=1.1.410",
     "rooster>=0.1.1",
     "twine>=6.2.0",
-    "ty>=0.0.49",
+    "ty>=0.0.50",
     # include here to sync deps with tools/sync_pyproject_min_version.py
     "cogapp>=3.6.0",
     "cruft>=2.16.0",
     "nbqa>=1.9.1",
     "packaging>=26.2",
-    "requirements-parser>=0.13.0",
+    "requirements-parser>=0.13.1",
 ]
 groups = [
     "basedpyright",

requirements/lock/uvx-tools.txt

@@ -101,25 +101,27 @@ prek==0.4.5 \
     --hash=sha256:f7517774c72b001573520dc7111156779fd3e5b4452c11f09ff53c71a067e835 \
     --hash=sha256:fccd11613ae92619d1ecda0ab3359ceebeb38898909ec84a8d383733d12158cc
     # via -r requirements/uvx-tools.txt
-pyrefly==1.0.0 \
-    --hash=sha256:1382d5b1fcdb49a4de9f34d112d2bddf290a78ff93ee8149492ad5f1077ddffc \
-    --hash=sha256:5c2b810ffcebd84be71de5df1223651edee951653a66935c6f091e957c452455 \
-    --hash=sha256:a7038efc3a40f8294edee339895633cf22db268c0d434cdbcbefc34f78a9ecc3 \
-    --hash=sha256:aa8b5d0e47080e3202a2547b39f7a5a61d2c781c712b3b67884f745ca2c759d2 \
-    --hash=sha256:c0d05543b1bb6ee6d64149eb5d6b2fb15aa72d3962d6a97abca0afaca8b0c131 \
-    --hash=sha256:c74219d8f3e63cdaa5501a0b21d1c9d37011820f9606728d0ed06f09ae86a878 \
-    --hash=sha256:c8abcb0f2082e83c890375128f9cff4aa4d3f210b85eea7b3046c1ae764e77f5 \
-    --hash=sha256:d150fa9e40e8392832be81c3bcfc0497c146674ce4d0f8e04e1ec29e775ffb8c \
-    --hash=sha256:da331ca515ed1c08791da2b5f664cf9c1294c48fd802133262e7d5d51e0f4416 \
-    --hash=sha256:e355a0908555348ed4b9585ef25c76ff566673e345c866c325f1633f44d890b6
+pyrefly==1.1.0 \
+    --hash=sha256:02acde22b08a40a578bd0b9218d93611d2b0cd3153e077b05c4efeabbaca636b \
+    --hash=sha256:12ddafc2f8fcfb39f8e80625af66e638b918be48f0d791314eb0d9d0ffe6741b \
+    --hash=sha256:4ca0c458dda0014408df4fff05cfb9a629ebfdd8c1e51c9ae50b4b8f17090648 \
+    --hash=sha256:5574aea21b461415691d0172db15b228f154f88c1885d679560ba9eba9a63b04 \
+    --hash=sha256:75c5e501e6014a21df6d4cda7e1e1c7feffdec29326d6ca413de5c26373f060a \
+    --hash=sha256:911a49b6d4c5819b5d63809f731290a5745c31ba7f239c788e3262cce77a732f \
+    --hash=sha256:9429da69592b76b12157f4ce432d41db290759c68f1a96ec9a3933763c32575d \
+    --hash=sha256:bb4c41404c4e19fb82d68555174737304be08508703c2c53b3012e62bc693901 \
+    --hash=sha256:ce4a34c5efaf8a2783456ed4ebc1d6ce7a2aa9dabe81b60610c166ecc295ca9d \
+    --hash=sha256:d35634efb8dfc5ec87832d5bfac06f15b6d09ca946835cd4077375b855083bf9 \
+    --hash=sha256:d51626ea993201f9bde799dd170392d72b8b618f9a93505d9886354397b33545 \
+    --hash=sha256:e0a634f984d9218a2cf0b0518c113c189f8909d20654dc139783ce6e0738f31e
     # via -r requirements/uvx-tools.txt
 pyright==1.1.410 \
     --hash=sha256:07a073b8ba6749826773c1269773efa11b93440d9a6aa60419d9a3172d6dc488 \
     --hash=sha256:5e961bed37cacf96b3f7cd7b1da39b350a9239aa2e69138d0e88f728cfaf296c
     # via -r requirements/uvx-tools.txt
-requirements-parser==0.13.0 \
-    --hash=sha256:0843119ca2cb2331de4eb31b10d70462e39ace698fd660a915c247d2301a4418 \
-    --hash=sha256:2b3173faecf19ec5501971b7222d38f04cb45bb9d87d0ad629ca71e2e62ded14
+requirements-parser==0.13.1 \
+    --hash=sha256:6e385663eb32589d16e5b22bb6e5251a57908e73803ffff438b53cd6ea2056e0 \
+    --hash=sha256:78811383b2089b6c5197a1431bc2c12ff950245edca39a23eea3460782038dd3
     # via -r requirements/uvx-tools.txt
 rooster==0.1.1 \
     --hash=sha256:c9823122f0c2b035985e70384323cdd353477af988e0f065bc302646a49da482 \
@@ -129,25 +131,25 @@ twine==6.2.0 \
     --hash=sha256:418ebf08ccda9a8caaebe414433b0ba5e25eb5e4a927667122fbe8f829f985d8 \
     --hash=sha256:e5ed0d2fd70c9959770dce51c8f39c8945c574e18173a7b81802dab51b4b75cf
     # via -r requirements/uvx-tools.txt
-ty==0.0.49 \
-    --hash=sha256:0a027bd0c9c75d035641a365d087ad883446057f9be0b9826251c2aecafbf145 \
-    --hash=sha256:10d85c6865c984e78661e0bd20b180514b4a289739224e84816e342bdf381e04 \
-    --hash=sha256:12c0c4310b936d762a8586c210b53d4fa4bb361a04429afa89bf84b922e5e065 \
-    --hash=sha256:166c6eb52ee4af3c5a9bb267d165d93000daa55c6758cd8ff3199741fb75917d \
-    --hash=sha256:1d96a67a206619e01fa92f35a22267ec634bba62be24b1d0e947020cc179995b \
-    --hash=sha256:3724bd9badef333321578b6a941fbc571ebf49141ec2356a8590fbe4c9aa588d \
-    --hash=sha256:3de9f648564e0a66344ef397770387cb0d093735f8679d2c5a08a4741e79814d \
-    --hash=sha256:4f2fc2bc4a8d2ff1cca59fd94772cabdfec4062d47a0b3a0784be46d94d0540b \
-    --hash=sha256:5779179ab397d15f8c9dbb8f506ec1b1745f54eac639982f76ef3ce538943b50 \
-    --hash=sha256:7186af5ca9829d1f5d8916bcf767b8e819bfbf61b1b8ec843bb3fc699cb502e1 \
-    --hash=sha256:727bda86deb136073e525c2e78d60e38aedcce5d80579170844a52bbf7c1440d \
-    --hash=sha256:737bfdc2caf9712a8580944dcdc80a450a37a4f2bc83c8fa9b7433b374f9e471 \
-    --hash=sha256:75d5e2e7649765f31f4bed6c8adb149a75b18edd3fa6336dac4d0efc1a66466f \
-    --hash=sha256:792d4974e93cc09bd32f934586080bbbe21b8e777099cb521cb2de18b68a49f0 \
-    --hash=sha256:91e81d832c287b05782ee32eb1b801f62c1fa08df37d589d2b88c3f1d51c9731 \
-    --hash=sha256:ab90c1baf3b1701d282fce4b02fa552a962d109f8972c46ef6b22429503bfea4 \
-    --hash=sha256:ae2142fc126a01effcca0c222908b0e6654b5ba1266d4e4d406e4866aef8e1d1 \
-    --hash=sha256:b4ce8ecf6ba6fc79bd137cc0557a754f7e5f2dfe9436412551d480d680e248ad
+ty==0.0.50 \
+    --hash=sha256:229d08c069beb2d896cc5556c3ba0e7f4c1b6d6a885297fabf2e6bcafa382a71 \
+    --hash=sha256:74b8c0df3e7d3294110e9862b7f8a3767f0e073dcb6ffa27f69fd63fd876149c \
+    --hash=sha256:7781ace006ab6b8bb9a7591dc20d1aaa79549d9d4e8169e5dc5cf8eef0754cd7 \
+    --hash=sha256:87289648401648f455823334f2a8c67bbc341d502033591c8b044e67537e661b \
+    --hash=sha256:88eed477756c7a0280a38de60bcabc64b3c6dcea1ac8b2a41c9210896358f6b9 \
+    --hash=sha256:8acf55714ec075997edfbf4dfd7ba3241c18c773e96f41398bb6d8008b83751a \
+    --hash=sha256:8b1e02ff71af62d7a1d9b8bfef98847f5c8bfd5bb8ae6da691cea405eb5a5e98 \
+    --hash=sha256:96a84d970b59f2eddb92a4af3ba9906f24bda118cf487d923765ccd4ca24627b \
+    --hash=sha256:b04a7717c22b9c66e9161e5af608669194cdd099c5ba0c507aeb479e6c1f9176 \
+    --hash=sha256:c3933810d0360a108c60cd3ea56e6c2eba2f5ecf7ee99d66ff30775d2ae9ed29 \
+    --hash=sha256:ca73efc88be2942c1733e88b026f1cea88cafeca0ee63742dd673971d9a96642 \
+    --hash=sha256:caa5d1c76f75cb6d3105ec8bf835c0a8fbc0950ccf15e3d1e9c52cb99b0ab2f5 \
+    --hash=sha256:cd8204f3a8df8fe68581e0b978124a90a143f35e3e7a7725a6e247b5ce1dcb33 \
+    --hash=sha256:d323f2a663e260923c11434655e95f37e04865b1e1641288a23cbcbca53074ee \
+    --hash=sha256:d336bbad38a68f16f16f84bb18f67215049b33196050c8ff67503e79619e70d2 \
+    --hash=sha256:d61cf42b8517e774354466252b085d83cdd0b51d771a63f99a4f21d5a44afc52 \
+    --hash=sha256:e8015a10f4caf07edc9245f178e64ea388bddb9fb8d2d73d2dc1cfe6b9790493 \
+    --hash=sha256:fbcd0ee844fd551bd946bb9d4fd2baf39a12aa0ad2f9f64db48352a82758abb3
     # via -r requirements/uvx-tools.txt
 typecheck-runner==0.2.0 \
     --hash=sha256:5467c5b0ef02a07ce84e18eed0eae88ba14266dff954244490eac17f5f7ef172 \

requirements/uvx-tools.txt

@@ -18,10 +18,10 @@ mypy[faster-cache]>=2.1.0
 nbqa>=1.9.1
 packaging>=26.2
 prek>=0.4.5
-pyrefly>=1.0.0
+pyrefly>=1.1.0
 pyright>=1.1.410
-requirements-parser>=0.13.0
+requirements-parser>=0.13.1
 rooster>=0.1.1
 twine>=6.2.0
-ty>=0.0.49
+ty>=0.0.50
 typecheck-runner>=0.2.0; python_version > "3.9"

tools/sync_pyproject_min_versions.py

@@ -5,7 +5,7 @@
 # requires-python = ">=3.12"
 # dependencies = [
 #     "packaging>=26.2",
-#     "requirements-parser>=0.13.0",
+#     "requirements-parser>=0.13.1",
 # ]
 # ///
 

tools/sync_pyproject_min_versions.py.lock

@@ -9,7 +9,7 @@ exclude-newer-span = "P7D"
 [manifest]
 requirements = [
     { name = "packaging", specifier = ">=26.2" },
-    { name = "requirements-parser", specifier = ">=0.13.0" },
+    { name = "requirements-parser", specifier = ">=0.13.1" },
 ]
 
 [[package]]
@@ -23,12 +23,12 @@ wheels = [
 
 [[package]]
 name = "requirements-parser"
-version = "0.13.0"
+version = "0.13.1"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "packaging" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/95/96/fb6dbfebb524d5601d359a47c78fe7ba1eef90fc4096404aa60c9a906fbb/requirements_parser-0.13.0.tar.gz", hash = "sha256:0843119ca2cb2331de4eb31b10d70462e39ace698fd660a915c247d2301a4418", size = 22630, upload-time = "2025-05-21T13:42:05.464Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/89/1a/5f3c22d38bf1d87d1f4a961489d9eba35c4370a21395562d94410cdd0e73/requirements_parser-0.13.1.tar.gz", hash = "sha256:78811383b2089b6c5197a1431bc2c12ff950245edca39a23eea3460782038dd3", size = 22783, upload-time = "2026-06-18T07:52:25.291Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/bd/60/50fbb6ffb35f733654466f1a90d162bcbea358adc3b0871339254fbc37b2/requirements_parser-0.13.0-py3-none-any.whl", hash = "sha256:2b3173faecf19ec5501971b7222d38f04cb45bb9d87d0ad629ca71e2e62ded14", size = 14782, upload-time = "2025-05-21T13:42:04.007Z" },
+    { url = "https://files.pythonhosted.org/packages/bb/f9/15b44d5e4401b0013bbcefe3c09d7bfddcce28cc3d41b1d3077bcedf5b1f/requirements_parser-0.13.1-py3-none-any.whl", hash = "sha256:6e385663eb32589d16e5b22bb6e5251a57908e73803ffff438b53cd6ea2056e0", size = 14926, upload-time = "2026-06-18T07:52:24.171Z" },
 ]

uv.lock

@@ -53,7 +53,7 @@ repos:
       - id: taplo-lint
         args: ["--no-schema"]
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.24.1
+    rev: v2.25.0
     hooks:
       - id: pyproject-fmt
   # ** validate (schema-store)
@@ -91,7 +91,7 @@ repos:
 
   # Just
   - repo: https://github.com/wpk-nist-gov/just-pre-commit
-    rev: v1.52.0
+    rev: v1.53.0
     hooks:
       - id: justfile-format
 

{{cookiecutter.project_name}}/.pre-commit-config.yaml

@@ -232,14 +232,10 @@ enable_error_code = [
 strict = true
 warn_unused_configs = true
 
-# [[tool.mypy.overrides]]
-# module = [  ]
-# ignore_missing_imports = true
-#
-# [[tool.mypy.overrides]]
-# module = [  ]
-# ignore_errors = true
-#
+## [[tool.mypy.overrides]]
+## module = [ "module.submodule.*" ]
+## ignore_missing_imports = true
+## ignore_errors = true
 [tool.pyrefly]
 enabled-ignores = [ "pyrefly" ]
 project-includes = [
@@ -252,7 +248,6 @@ search-path = [ "." ]
 
 [tool.pyright]
 typeCheckingMode = "strict"
-# typeCheckingMode= "standard"
 include = [
     "noxfile.py",
     "src",
@@ -268,19 +263,13 @@ exclude = [
     ".venv/**",
 ]
 enableTypeIgnoreComments = false
-# strict = [
-#     "src",
-#     "tests",
-#     "noxfile.py",
-#     "tools/*.py",
-# ]
-# options
-# reportMissingSuperCall = true
 deprecateTypingAliases = true
 reportCallInDefaultInitializer = true
 reportImplicitOverride = true
 reportImplicitStringConcatenation = false
 reportImportCycles = true
+# options
+# reportMissingSuperCall = true
 reportOverlappingOverload = true
 reportPrivateImportUsage = false
 reportPrivateUsage = false
@@ -295,6 +284,12 @@ reportUnusedImport = false
 reportUnusedVariable = false
 enableReachabilityAnalysis = false
 
+# strict = [
+#     "src",
+#     "tests",
+#     "noxfile.py",
+#     "tools/*.py",
+# ]
 [[tool.pyright.executionEnvironments]]
 root = "tests"
 # reportArgumentType = false
@@ -403,11 +398,11 @@ pip-deps = [
     "nbqa>=1.9.1",
     {%- endif %}
     "prek>=0.4.5",
-    "pyrefly>=1.0.0",
+    "pyrefly>=1.1.0",
     "pyright>=1.1.410",
     "rooster>=0.1.1",
     "twine>=6.2.0",
-    "ty>=0.0.49",
+    "ty>=0.0.50",
 ]
 groups = [
     "basedpyright",