NGS-variants-training/2022.9/day1/alignment_advanced/

[giscus[bot]]

NGS-variants-training/2022.9/day1/alignment_advanced/

https://sib-swiss.github.io/NGS-variants-training/2022.9/day1/alignment_advanced/

[GeertvanGeest]

Often, there are multiple lanes (and sometimes libraries) per sample. You can find guidance here. On when to merge them. Basically, it means that you merge your bam files per sample after you have added the read groups.