Last Updated : April 10, 2026
Purpose : Comprehensive index of all Atom documentation with quick links and descriptions
📚 Back to Documentation Hub - Browse by category (Agents, Intelligence, Integration, Platform)
🚀 Recent Updates (June 2026)
2026 Enhancement Plan : ✅ COMPLETE - All 5 phases delivered with validation metrics
ARBOR_FRAMEWORK.md - ✨ NEW: Arbor Hypothesis Tree Refinement (HTR) - Tree-based LLM code generation with cumulative learning
Phase 1: POMDP Memory Framework - Experience-driven agent learning
Phase 2: GraphRAG Enhancement - Multi-hop expansion, dynamic graphs
Phase 3: Learning-Based LLM Routing - RouteLLM with 15% cost savings
Phase 4: Zero-Trust Federation Identity - DID/VC with mTLS
Phase 5: Enhanced Orchestration - Conductor Agent, workflow state machine
Canvas Integration : ✅ COMPLETE - Canvas system integrated with Phase 1-5 features
UI/UX Enhancement : ✅ COMPLETE - User journeys updated with 2026 features
🚀 Recent Updates (April 2026)
Documentation Updates : ✨ NEW - Added 7 comprehensive documentation files with verified metrics
Commercial Marketplace : ✨ NEW - Mothership architecture with agentagentos.com - Proprietary marketplace for agents, domains, components, skills
Phase 234 : E2E Testing Infrastructure - 486 E2E test functions with API-first authentication
Phase 237 : Bug Discovery Infrastructure - AI-enhanced bug discovery (fuzzing, property-based testing, chaos)
Phase 236 : Cross-Platform & Stress Testing - Load testing with k6, network simulation, failure injection
Phase 64 : E2E Test Suite - 217+ E2E tests with real services (PostgreSQL, Redis, Docker)
Phase 63 : Documentation Audit - 98/100 health score, all features documented
Phase 61 : Skill Marketplace Sync - Bidirectional marketplace sync for skills and ratings
Phase 60 : Advanced Skill Execution - Marketplace, composition, dynamic loading
Phase 36 : npm Package Support - 2M+ packages with governance
Phase 35 : Python Package Support - 350K+ packages with vulnerability scanning
⚠️ IMPORTANT : Before contributing, read CONTRIBUTING.md for critical security guidelines.
🛒 Commercial Marketplace (atomagentos.com)
⚠️ Commercial Service: The marketplace is a proprietary service requiring connection to atomagentos.com. See LICENSE.md for details.
Document
Description
Last Updated
marketplace/connection.md
✨ NEW: Marketplace connection guide - Setup, configuration, troubleshooting
Apr 7, 2026
GUIDES/MARKETPLACE_QUICKSTART.md
✨ NEW: Marketplace quick start - 5-minute setup
Apr 10, 2026
marketplace/canvas-components.md
✨ NEW: Canvas component marketplace - Browse, install, use components
Apr 7, 2026
marketplace/domains.md
✨ NEW: Domain marketplace - Specialist knowledge domains
Apr 7, 2026
marketplace/skills.md
Skills marketplace - Agent capabilities and integrations
Apr 6, 2026
marketplace/analytics.md
Marketplace analytics and usage tracking
Apr 6, 2026
🌐 Community Skills & Package Support
Document
Description
Last Updated
Marketplace Documentation
✨ NEW: Complete marketplace guide (connection, skills, analytics)
Apr 7, 2026
MARKETPLACE_CONNECTION_GUIDE.md
✨ NEW: Connect to Atom SaaS marketplace
Apr 6, 2026
COMMUNITY_SKILLS.md
5,000+ OpenClaw/ClawHub skills guide
Feb 19, 2026
PYTHON_PACKAGES.md
Python Package Support (NumPy, Pandas, 350K+ packages)
Apr 7, 2026
PACKAGE_GOVERNANCE.md
Maturity-based access control and approval workflow
Feb 19, 2026
PACKAGE_SECURITY.md
Vulnerability scanning and supply chain security
Feb 19, 2026
PYTHON_PACKAGES_DEPLOYMENT.md
Production deployment and monitoring
Feb 19, 2026
NPM_PACKAGE_SUPPORT.md
npm Package Support (Lodash, Express, 2M+ packages)
Feb 19, 2026
ADVANCED_SKILL_EXECUTION.md
Phase 60: Marketplace, composition, dynamic loading
Feb 19, 2026
SKILL_MARKETPLACE_GUIDE.md
PostgreSQL-based skill marketplace guide
Feb 19, 2026
SKILL_COMPOSITION_PATTERNS.md
DAG workflows and skill composition
Feb 19, 2026
PERFORMANCE_TUNING.md
Performance optimization and benchmarks
Feb 19, 2026
ATOM_CLI_SKILLS_GUIDE.md
Built-in CLI skills (daemon, status, start, stop, execute, config)
Apr 7, 2026
🌐 Federation & Multi-Instance
Document
Description
Last Updated
[AUTHENTICATION.md]#
OAuth 2.0, session management, request validation
Feb 6, 2026
[DATA_PROTECTION.md]#
Fernet encryption, secrets management, migration
Feb 6, 2026
WEBHOOK_VERIFICATION.md
Slack, Teams, Gmail webhook signature verification
Feb 6, 2026
COMPLIANCE.md
GDPR, SOC2, HIPAA considerations
-
SECURITY_OVERVIEW.md
Security architecture overview
-
Document
Description
Last Updated
QUEEN_AGENT.md
Queen Agent (Queen Hive) - Structured workflow automation
Apr 7, 2026
GUIDES/QUEEN_AGENT_USER_GUIDE.md
✨ NEW: Queen Agent user guide - Blueprints, scheduling, monitoring
Apr 10, 2026
agents/unstructured-tasks.md
Intent classification & dynamic routing (CHAT/WORKFLOW/TASK)
Apr 7, 2026
agents/fleet-admiral.md
Multi-agent fleet coordination for unstructured long-horizon tasks
Apr 7, 2026
agents/overview.md
Agent system overview and intent classification
Apr 7, 2026
GUIDES/QUEEN_VS_FLEET_ADMIRAL.md
✨ NEW: Queen Agent vs Fleet Admiral - Which orchestrator to use?
Apr 10, 2026
GUIDES/AUTO_DEV_USER_GUIDE.md
✨ Auto-Dev Module - Self-evolving agent capabilities
Apr 10, 2026
intelligence/self-evolution.md
✨ NEW: Self-Evolution & Reflection Pool - Complete guide
Apr 12, 2026
Intelligence & Learning Systems
Document
Description
Last Updated
ARBOR_FRAMEWORK.md
✨ Arbor Framework - Hypothesis Tree Refinement (HTR) - LLM code generation with tree search
Jun 18, 2026
intelligence/overview.md
Intelligence systems overview - Memory, knowledge, and reasoning
Apr 7, 2026
intelligence/episodic-memory.md
Episodic Memory - Agent learning framework
Feb 3, 2026
intelligence/self-evolution.md
✨ Self-Evolution & Reflection Pool - Critique-based learning and Auto-Dev
Apr 12, 2026
intelligence/graphrag.md
GraphRAG & Entity Types - Knowledge graph and entity extraction
Mar 24, 2026
intelligence/world-model-guide.md
World Model & Business Facts - Knowledge management and JIT provision
Apr 7, 2026
intelligence/jit-facts.md
JIT Fact Provision - Real-time fact verification with citations
Apr 7, 2026
intelligence/vector-embeddings.md
Vector Embeddings - Semantic search infrastructure (FastEmbed, OpenAI)
Feb 16, 2026
intelligence/memory-integration.md
Memory integration guide
Feb 4, 2026
EPISODIC_MEMORY_QUICK_START.md
Episodic memory quick start guide
Feb 4, 2026
CANVAS_FEEDBACK_EPISODIC_MEMORY.md
Canvas presentations in episodes
Feb 4, 2026
Document
Description
Last Updated
API.md
Build custom integrations
-
[CONTRIBUTING_INTEGRATIONS.md]#
Integration contribution guide
-
[BYOK_LLM_INTEGRATION_COMPLETE.md]#
Multi-provider LLM setup
Feb 5, 2026
✨ Phase 15: Production Readiness (Feb 16, 2026)
Document
Description
Last Updated
API_DOCUMENTATION.md
Comprehensive API documentation (26,299 lines)
Feb 16, 2026
DEPLOYMENT_RUNBOOK.md
Deployment procedures with rollback
Feb 16, 2026
OPERATIONS_GUIDE.md
Daily operations & common tasks
Feb 16, 2026
TROUBLESHOOTING.md
Production troubleshooting guide
Feb 16, 2026
API_TESTING_GUIDE.md
API testing guide (18,288 lines)
Feb 16, 2026
CODE_QUALITY_STANDARDS.md
Type hints, MyPy, code quality (9,412 lines)
Feb 16, 2026
Monitoring & Observability
E2E Testing ✨ NEW (March 2026)
E2E Test Infrastructure (Phase 234) :
91+ comprehensive E2E tests with Playwright Python 1.58.0
API-first authentication (10-100x faster than UI login)
Worker-based database isolation for parallel execution
Page Object Model for maintainable UI abstractions
Comprehensive fixture suite (auth, database, API, factory)
Tests complete in under 10 minutes with parallel execution
Bug Discovery ✨ NEW (March 2026)
Document
Description
Last Updated
[docs/testing/BUG_DISCOVERY_INFRASTRUCTURE.md]#
AI-enhanced bug discovery infrastructure
Mar 28, 2026
[docs/testing/BUG_DISCOVERY.md]#
Bug discovery guide
Mar 28, 2026
Phase 237: Bug Discovery Infrastructure
Bug discovery foundation (fuzzing, property-based testing, chaos)
Mar 24, 2026
Bug Discovery Features (Phase 237) :
Automated fuzzing with atheris (coverage-guided fuzzing)
Mutation testing with mutmut for test quality validation
Property-based testing with Hypothesis framework (66+ invariants)
Chaos engineering with locust for load testing
Automated bug filing with GitHub Issues API integration
CI pipeline separation (fast PR tests <10min, weekly bug discovery ~2 hours)
Stress Testing ✨ NEW (March 2026)
Stress Testing Features (Phase 236) :
k6 load testing (10/50/100 concurrent users)
Network simulation (slow 3G, offline mode)
Failure injection (database drops, API timeouts)
Memory leak detection with CDP heap snapshots
Performance regression testing with Lighthouse CI
Cross-platform testing (mobile API-level, desktop Tauri)
Visual regression testing with Percy
Accessibility testing with jest-axe (WCAG 2.1 AA)
Test Suite Summary :
495+ tests (unit, integration, E2E, bug discovery)
99%+ pass rate (TQ-02 standard)
17-27% overall coverage (expanding to 80%)
60-70% coverage for MCP service
<60min full suite execution time
<30s per test performance target
Archived Implementation Summaries (2026)
Archived Implementation Summaries (2025-12)
Security :
[AUTHENTICATION.md]# - OAuth and session management
[DATA_PROTECTION.md]# - Encryption and secrets
WEBHOOK_VERIFICATION.md - Webhook security
Agent Systems :
Canvas :
Integrations :
[BYOK_LLM_INTEGRATION_COMPLETE.md]# - LLM providers
INTEGRATIONS.md - Workflows
Background Jobs :
February 2026 :
Canvas & AI Features (Phase 20-23)
January 2026 :
Document
Description
Last Updated
[INCOMPLETE_IMPLEMENTATIONS.md]#
Recent fixes status (Feb 5, 2026)
Feb 5, 2026
Production Readiness
Production deployment
Feb 5, 2026
API_STANDARDS.md
API standards
Feb 4, 2026
[BYOK_LLM_INTEGRATION_COMPLETE.md]#
LLM integration
Feb 5, 2026
[FINAL_IMPLEMENTATION_SUMMARY.md]#
Final implementation summary
Feb 5, 2026
API_DOCUMENTATION.md
Comprehensive API docs
Feb 16, 2026
DEPLOYMENT_RUNBOOK.md
Deployment runbook
Feb 16, 2026
OPERATIONS_GUIDE.md
Operations guide
Feb 16, 2026
TROUBLESHOOTING.md
Troubleshooting guide
Feb 16, 2026
MONITORING_SETUP.md
Monitoring setup
Feb 16, 2026
CODE_QUALITY_STANDARDS.md
Code quality standards
Feb 16, 2026
API_TESTING_GUIDE.md
API testing guide
Feb 16, 2026
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