STRY0020017 - Update Galaxy tool wrapper for StarAMR to version 0.12.1 #220
emarinierpr.yaml
on: pull_request
Matrix: Setup cache and determine changed repositories
Matrix: Lint tool-list
Matrix: Lint Python scripts
Matrix: Lint R scripts
Matrix: Test tools
Matrix: Combine chunked test results
Matrix: Deploy
Check workflow success
4s
Report deploy status
0s
Annotations
7 errors and 4 warnings
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Lint tool-list (3.11)
Process completed with exit code 1.
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Lint R scripts (ubuntu-24.04, release)
Process completed with exit code 126.
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Test tools (0, 3.11)
Canceling since a higher priority waiting request for pr-refs/pull/276/merge exists
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Test tools (0, 3.11)
The operation was canceled.
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Combine chunked test results (3.11)
Process completed with exit code 2.
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Check workflow success
Process completed with exit code 1.
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Galaxy Tool Linting and Tests for push and PR
Canceling since a higher priority waiting request for pr-refs/pull/276/merge exists
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Lint tool-list (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: sharesight/find-github-pull-request@v1.3.0. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Lint R scripts (ubuntu-24.04, release)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Lint R scripts (ubuntu-24.04, release)
No files were found with the provided path: rlint_report.txt. No artifacts will be uploaded.
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Test tools (0, 3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: SimenB/github-actions-cpu-cores@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Artifacts
Produced during runtime
| Name | Size | Digest | |
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Tool linting output
Expired
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798 Bytes |
sha256:4979676454373de915edc07571689822fd3db074fe5041c05d2da52499106d86
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