STRY0020017 - Update Galaxy tool wrapper for StarAMR to version 0.12.1 #218
emarinierpr.yaml
on: pull_request
Matrix: Setup cache and determine changed repositories
Matrix: Lint tool-list
Matrix: Lint Python scripts
Matrix: Lint R scripts
Matrix: Test tools
Matrix: Combine chunked test results
Matrix: Deploy
Check workflow success
2s
Report deploy status
Annotations
3 errors and 2 warnings
|
Lint R scripts (ubuntu-24.04, release)
The actions actions/cache@v4, r-lib/actions/setup-pandoc@v2, and quarto-dev/quarto-actions/setup@9e48da27e184aa238fcb49f5db75469626d43adb are not allowed in phac-nml/galaxy_tools because all actions must be from a repository owned by phac-nml or match one of the patterns: 8bitjonny/gh-get-current-pr@2.2.0, 8bitjonny/gh-get-current-pr@4.0.0, SimenB/github-actions-cpu-cores@v1, actions/cache@v2, actions/cache@v3, actions/cache@v5, actions/checkout@v2, actions/checkout@v3, actions/checkout@v6, actions/download-artifact@v2, actions/download-artifact@v3, actions/download-artifact@v4, actions/download-artifact@v7, actions/setup-python@v1, actions/setup-python@v4, actions/setup-python@v6, actions/upload-artifact@v2, actions/upload-artifact@v3, actions/upload-artifact@v4, actions/upload-artifact@v6, galaxyproject/planemo-ci-action@v1, peter-evans/create-or-update-comment@v2, peter-evans/create-or-update-comment@v5, r-lib/actions/setup-r-dependencies@v2, r-lib/actions/setup-r@v2, sharesight/...
|
|
Lint tool-list (3.11)
Process completed with exit code 1.
|
|
Check workflow success
Process completed with exit code 1.
|
|
Lint tool-list (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: sharesight/find-github-pull-request@v1.3.0. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
Test tools (0, 3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: SimenB/github-actions-cpu-cores@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
|
All tool test results
Expired
|
119 KB |
sha256:19881acff39dedbe3e8fa2444b06c6325b4754af253234390fa6f3c557a926f1
|
|
|
Tool linting output
Expired
|
798 Bytes |
sha256:1555c729d39d02a28c5da0e79db7ad427fa4deb26df3c18758de29cf79662020
|
|
|
Tool test output 0
Expired
|
114 KB |
sha256:488a3b21c0d45dbc984eca5e56cacd9b32501e222dbba933c71b8d2a12d27f0b
|
|