Skip to content

@EuracBiomedicalResearch EuracBiomedicalResearch

Change the repository type filter

All

    Repositories list

    32 repositories

    • ifb_bioconductor_docker

      Public
      Docker containers based on Bioconductor's docker with additional software used by the Institute for Biomedicine (IfB) from Eurac Research.
      Dockerfile
      •0•0•0•0•Updated Jun 8, 2026Jun 8, 2026

    • genomic_viewer

      Public
      Genomic Viewer is a cross-platform application for visualizing and analyzing genomic data and is hosted in a Docker container.
      R
      •0•1•0•0•Updated Jun 5, 2026Jun 5, 2026

    • software_setup

      Public
      Various scripts and descriptions to setup software and resources on a computer cluster and regular computers.
      R
      •1•0•3•0•Updated May 12, 2026May 12, 2026

    • nafld_proteo_metabolomics

      Public
      Association analyses of NAFLD metabolomics and proteomics data.
      TeX
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • metabo_chris_untargeted

      Public
      Repository for the pre-processing of the untargeted metabolomics data from CHRIS
      TeX
      •0•0•1•0•Updated Jan 13, 2026Jan 13, 2026

    • chris-pdta-t2d

      Public
      Analysis evaluating stratification of CHRIS study participants according to the T2D PDTA document.
      0•0•2•0•Updated Dec 11, 2025Dec 11, 2025

    • tidyfr

      Public
      R interface to retrieve CHRIS data.
      R
      •1•1•2•1•Updated Oct 7, 2025Oct 7, 2025

    • tblutils

      Public
      Text-based Table Utilities
      Perl
      •
      GNU General Public License v3.0
      •4•3•0•0•Updated Sep 3, 2025Sep 3, 2025

    • prs_pipeline

      Public
      Pipeline for PRS computation integrating diverse PRS algorithms into a unique Snakemake workflow.
      geneticsbioinformatics-pipelinepolygenic-risk-scores
      geneticsbioinformatics-pipelinepolygenic-risk-scores
      R
      •
      Apache License 2.0
      •0•2•0•0•Updated Jun 19, 2025Jun 19, 2025

    • chris_plasma_proteome

      Public
      General data analysis of the ScanningSWATH mass spectrometry-based plasma proteomics data of CHRIS.
      TeX
      •1•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • lcms-standards

      Public
      Measurements of standard compounds in LC/MS setups and configurations at Eurac Research
      metabolomics
      metabolomics
      R
      •0•2•4•0•Updated Jan 15, 2025Jan 15, 2025

    • end-to-end-untargeted-metabolomics

      Public
      A simple end-to-end untargeted metabolomics analysis workflow
      TeX
      •1•7•5•0•Updated Aug 26, 2024Aug 26, 2024

    • DigitalSpiralography

      Public
      Digital Spiralography
      Python
      •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

    • RescueOMR

      Public
      batch Optical Mark Recognition without foresight
      Python
      •
      GNU Affero General Public License v3.0
      •8•38•4•0•Updated Apr 1, 2024Apr 1, 2024

    • clickmaster2000

      Public
      A tally counter for images
      Python
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Apr 1, 2024Apr 1, 2024

    • CompMetaboTools

      Public
      Utility functions frequently used in analyses of the Computational Metabolomics Team
      R
      •0•4•1•0•Updated Jan 11, 2024Jan 11, 2024

    • VAMS_vs_intraveinous

      Public
      Comparison of Volumetric Absorbtive Microsampling to venous blood sampling
      data-analysismetabolomics
      data-analysismetabolomics
      R
      •0•0•6•0•Updated Mar 17, 2023Mar 17, 2023

    • mitra_short_term_stability

      Public
      HILIC-based untargeted metabolomics experiment to evaluate short-term stability of Neoteryx Mitra blood microsamples.
      TeX
      •0•0•0•0•Updated Mar 17, 2023Mar 17, 2023

    • FamAgg

      Public
      This is the development version of the FamAgg Bioconductor package.
      geneticspedigree
      geneticspedigree
      R
      •
      MIT License
      •2•1•8•0•Updated Mar 10, 2023Mar 10, 2023

    • shinylocuszoom

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Nov 7, 2022Nov 7, 2022

    • batch_centroid

      Public
      Utility functions to perform batch centroiding of profile mzML files using MSnbase
      metabolomics
      metabolomics
      R
      •2•3•2•0•Updated May 24, 2022May 24, 2022

    • isotopologues

      Public
      R
      •1•0•1•0•Updated May 13, 2022May 13, 2022

    • mr.inflpd

      Public
      R
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated Apr 6, 2022Apr 6, 2022

    • MyRpkg

      Public
      My first R package trying to use git version control
      JavaScript
      •0•0•0•0•Updated Mar 20, 2022Mar 20, 2022

    • personal_R_functions

      Public
      Some useful functions to study microbiome in the context of a population study
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • trainckdis.mr

      Public
      Repository for the MR session material of the TrainCKDis Summer School 2021
      JavaScript
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 14, 2021Jul 14, 2021

    • smhplot

      Public
      Sparkling Manhattan Plot
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated May 17, 2021May 17, 2021

    • Microbiome

      Public
      The idea is that here you can find useful scripts and other documentation to process microbiome data
      R
      •0•0•1•0•Updated Aug 6, 2020Aug 6, 2020

    • rvtests

      Public
      Rare variant test software for next generation sequencing data
      C++
      •42•0•0•0•Updated Oct 28, 2019Oct 28, 2019

    • tecanFluentWorklists

      Public
      Scripts used for generating worklists for the Tecan Fluent based on data generated via the incredible liquid level detection
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 31, 2018Aug 31, 2018
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.