remove old defs

nvnieuwk · nvnieuwk · commit a9b0127048ab · 2026-04-09T14:35:57.000+02:00
diff --git a/tests/pipeline/bedpe/bedpe.nf.test b/tests/pipeline/bedpe/bedpe.nf.test
@@ -91,10 +91,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}
diff --git a/tests/pipeline/cnv/cnv.nf.test b/tests/pipeline/cnv/cnv.nf.test
@@ -67,10 +67,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}
diff --git a/tests/pipeline/duplicates/duplicates.nf.test b/tests/pipeline/duplicates/duplicates.nf.test
@@ -38,10 +38,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}
diff --git a/tests/pipeline/families/families.nf.test b/tests/pipeline/families/families.nf.test
@@ -131,10 +131,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}
diff --git a/tests/pipeline/repeats/repeats.nf.test b/tests/pipeline/repeats/repeats.nf.test
@@ -38,10 +38,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}
diff --git a/tests/pipeline/sv/sv.nf.test b/tests/pipeline/sv/sv.nf.test
@@ -67,10 +67,3 @@ nextflow_pipeline {
     }
 
 }
-
-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {
-    if(file(fileOrDir.toString()).isDirectory()) {
-        return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }
-    }
-    return fileOrDir.toString().replace("${outputDir}/", "")
-}

Original file line number	Diff line number	Diff line change
`@@ -91,10 +91,3 @@ nextflow_pipeline {`
`91`	`91`	`}`
`92`	`92`
`93`	`93`	`}`
`94`		`-`
`95`		`-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {`
`96`		`- if(file(fileOrDir.toString()).isDirectory()) {`
`97`		`- return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }`
`98`		`- }`
`99`		`- return fileOrDir.toString().replace("${outputDir}/", "")`
`100`		`-}`
Original file line number	Diff line number	Diff line change
`@@ -67,10 +67,3 @@ nextflow_pipeline {`
`67`	`67`	`}`
`68`	`68`
`69`	`69`	`}`
`70`		`-`
`71`		`-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {`
`72`		`- if(file(fileOrDir.toString()).isDirectory()) {`
`73`		`- return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }`
`74`		`- }`
`75`		`- return fileOrDir.toString().replace("${outputDir}/", "")`
`76`		`-}`
Original file line number	Diff line number	Diff line change
`@@ -38,10 +38,3 @@ nextflow_pipeline {`
`38`	`38`	`}`
`39`	`39`
`40`	`40`	`}`
`41`		`-`
`42`		`-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {`
`43`		`- if(file(fileOrDir.toString()).isDirectory()) {`
`44`		`- return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }`
`45`		`- }`
`46`		`- return fileOrDir.toString().replace("${outputDir}/", "")`
`47`		`-}`
Original file line number	Diff line number	Diff line change
`@@ -131,10 +131,3 @@ nextflow_pipeline {`
`131`	`131`	`}`
`132`	`132`
`133`	`133`	`}`
`134`		`-`
`135`		`-def Utils.getRecursiveFileNames(fileOrDir, outputDir) {`
`136`		`- if(file(fileOrDir.toString()).isDirectory()) {`
`137`		`- return fileOrDir.list().collect { Utils.getRecursiveFileNames(it, outputDir) }`
`138`		`- }`
`139`		`- return fileOrDir.toString().replace("${outputDir}/", "")`
`140`		`-}`