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Bump bcftools modules #118

Bump bcftools modules

Bump bcftools modules #118

Triggered via pull request June 4, 2026 08:33
Status Cancelled
Total duration 14m 46s
Artifacts

nf-test.yml

on: pull_request
nf-test-changes
17s
nf-test-changes
Matrix: nf-test
confirm-pass
3s
confirm-pass
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66 errors and 22 warnings
docker | 26.04.0 | 1/7
Process completed with exit code 1.
docker | 26.04.0 | 1/7
Test with 26.04.0 failed
docker | 26.04.0 | 1/7
Process completed with exit code 1.
docker | latest-everything | 3/7
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docker | 26.04.0 | 2/7
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docker | 26.04.0 | 2/7
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docker | 26.04.0 | 2/7
Process completed with exit code 1.
singularity | 26.04.0 | 6/7
Process completed with exit code 1.
singularity | 26.04.0 | 6/7
Test with 26.04.0 failed
singularity | 26.04.0 | 6/7
Process completed with exit code 1.
docker | 26.04.0 | 5/7
Process completed with exit code 1.
docker | 26.04.0 | 5/7
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docker | 26.04.0 | 5/7
Process completed with exit code 1.
singularity | latest-everything | 7/7
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singularity | latest-everything | 7/7
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singularity | 26.04.0 | 3/7
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singularity | 26.04.0 | 3/7
Test with 26.04.0 failed
singularity | 26.04.0 | 3/7
Process completed with exit code 1.
docker | latest-everything | 7/7
Test with latest-everything failed
docker | latest-everything | 7/7
Process completed with exit code 1.
docker | latest-everything | 6/7
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docker | latest-everything | 6/7
Process completed with exit code 1.
docker | 26.04.0 | 4/7
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docker | 26.04.0 | 4/7
Test with 26.04.0 failed
docker | 26.04.0 | 4/7
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docker | 26.04.0 | 6/7
Process completed with exit code 1.
docker | 26.04.0 | 6/7
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docker | 26.04.0 | 6/7
Process completed with exit code 1.
docker | 26.04.0 | 7/7
Process completed with exit code 1.
docker | 26.04.0 | 7/7
Test with 26.04.0 failed
docker | 26.04.0 | 7/7
Process completed with exit code 1.
singularity | latest-everything | 6/7
Test with latest-everything failed
singularity | latest-everything | 6/7
Process completed with exit code 1.
singularity | latest-everything | 1/7
Test with latest-everything failed
singularity | latest-everything | 1/7
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singularity | latest-everything | 4/7
Test with latest-everything failed
singularity | latest-everything | 4/7
Process completed with exit code 1.
docker | latest-everything | 1/7
Test with latest-everything failed
docker | latest-everything | 1/7
Process completed with exit code 1.
singularity | latest-everything | 5/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | latest-everything | 5/7
The operation was canceled.
docker | latest-everything | 5/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
docker | latest-everything | 5/7
The operation was canceled.
singularity | 26.04.0 | 5/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | 26.04.0 | 5/7
The operation was canceled.
docker | latest-everything | 4/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
docker | latest-everything | 4/7
The operation was canceled.
docker | 26.04.0 | 3/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
docker | 26.04.0 | 3/7
The operation was canceled.
singularity | 26.04.0 | 7/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | 26.04.0 | 7/7
The operation was canceled.
singularity | latest-everything | 2/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | latest-everything | 2/7
The operation was canceled.
singularity | 26.04.0 | 2/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | 26.04.0 | 2/7
The operation was canceled.
singularity | 26.04.0 | 1/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | 26.04.0 | 4/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | 26.04.0 | 1/7
The operation was canceled.
singularity | 26.04.0 | 4/7
The operation was canceled.
docker | latest-everything | 2/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
docker | latest-everything | 2/7
The operation was canceled.
singularity | latest-everything | 3/7
Canceling since a higher priority waiting request for Run nf-test-338 exists
singularity | latest-everything | 3/7
The operation was canceled.
confirm-pass
Process completed with exit code 1.
Run nf-test
Canceling since a higher priority waiting request for Run nf-test-338 exists
docker | latest-everything | 3/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | 26.04.0 | 6/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 7/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 7/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | 26.04.0 | 3/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
docker | latest-everything | 7/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 6/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | latest-everything | 6/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 6/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | latest-everything | 1/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 1/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | latest-everything | 4/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 4/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 1/7
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
singularity | latest-everything | 5/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 26.04.0 | 5/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 26.04.0 | 7/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 2/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 26.04.0 | 2/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 26.04.0 | 1/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 26.04.0 | 4/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 3/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/