Initial commits - use pixi, slight restructure and refactor #8

Workflow file for this run

.github/workflows/test_and_deploy.yml at db62a89

	name: Tests, Package, and Deployment

	on:
	workflow_dispatch:
	pull_request:
	push:
	branches: [next, qa, main]
	tags: ["v*"]

	# cancel previous job if new commit is pushed
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	env:
	PKG_NAME: dgs_resolution

	jobs:
	#################
	### Run Tests ###
	#################

	tests:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v6

	- name: Setup Pixi
	uses: prefix-dev/setup-pixi@v0.9.4

	# - name: Install chromium
	# run: \|
	# echo "chromium enables testing HTML reports"
	# sudo apt-get install --yes chromium-browser

	# - name: Run unit tests
	# run: \|
	# pixi run test -vv -m "not datarepo and not sns_mounted" --cov=src --cov-report=xml --cov-report=term-missing tests/
	# mv .coverage .coverage.unit

	# - name: Run integration tests
	# run: \|
	# git submodule update --init
	# pixi run test -vv -m "datarepo" --cov=src --cov-report=xml --cov-report=term-missing tests/
	# mv .coverage .coverage.integration

	# - name: Upload coverage to codecov
	# uses: codecov/codecov-action@v5
	# with:
	# token: ${{ secrets.CODECOV_TOKEN }}

	##############################
	### Package and Deployment ###
	##############################

	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v6
	with:
	fetch-depth: 100
	fetch-tags: true
	ref: ${{ github.ref }}

	- name: Setup Pixi
	uses: prefix-dev/setup-pixi@v0.9.4

	- name: Build conda package
	run: \|
	pixi run conda-build
	mkdir -p /tmp/local-channel/linux-64
	cp ${{ env.PKG_NAME }}-*.conda /tmp/local-channel/linux-64/

	- name: Verify Conda Package
	uses: neutrons/conda-verify@main
	with:
	python-version: "3.11"
	local-channel: /tmp/local-channel
	package-name: ${{ env.PKG_NAME }}

	# Upload the conda package for job "publish" to use later
	- name: upload conda package as artifact
	uses: actions/upload-artifact@v6
	if: startsWith(github.ref, 'refs/tags/v')
	with:
	name: artifact-conda-package
	path: ${{ env.PKG_NAME }}-*.conda

	# Publish the package as a separate job so that the Github Actions webpage
	# shows it as a separate step in the CI workflow
	publish:
	runs-on: ubuntu-latest
	needs: [tests, build]
	if: startsWith(github.ref, 'refs/tags/v')
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v6
	with:
	fetch-depth: 100
	fetch-tags: true
	ref: ${{ github.ref }}

	- name: Setup Pixi
	uses: prefix-dev/setup-pixi@v0.9.4

	- name: Download conda package artifact
	uses: actions/download-artifact@v7
	with:
	name: artifact-conda-package

	- name: Upload package to anaconda
	env:
	ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
	IS_RC: ${{ contains(github.ref, 'rc') }}
	run: \|
	# label is main or rc depending on the tag-name
	CONDA_LABEL="main"
	if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi
	echo pushing ${{ github.ref }} with label $CONDA_LABEL
	pixi run anaconda upload --label $CONDA_LABEL --user neutrons ${{ env.PKG_NAME }}-*.conda

	# Trigger GitLab dev deploy pipeline
	deploy-dev:
	runs-on: ubuntu-latest
	needs: build
	if: github.ref == 'refs/heads/next'
	steps:
	- name: Get Environment Name
	uses: neutrons/branch-mapper@main
	id: env_name
	with:
	prefix: mr_reduction

	- name: Trigger Dev Deploy
	# use https://github.com/eic/trigger-gitlab-ci/pull/14 until merged
	uses: eic/trigger-gitlab-ci@d984d8d53d871d2fdc1325639d94322da6e8747f
	id: trigger
	with:
	url: https://code.ornl.gov
	project_id: 20403
	ref_name: main
	token: ${{ secrets.GITLAB_DEPLOY_TOKEN }}

	- name: Annotate commit
	uses: peter-evans/commit-comment@v4
	with:
	body: \|
	GitLab pipeline for ${{ steps.env_name.outputs.name }} has been submitted for this commit: ${{ steps.trigger.outputs.web_url }}

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Initial commits - use pixi, slight restructure and refactor #8

Workflow file

Initial commits - use pixi, slight restructure and refactor #8

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Workflow file for this run