Skip to content

Commit 62c9652

Browse files
committed
Pull request #606: Added the feature to search AlphaFold structures with protein/gene names directly in iCn3D via the menu "File > Search Structures > AlphaFold Structures".
Merge in STRUC/icn3d from release3270 to master * commit 'c8bbb2f6ce8bc4c397f55b425f2bd73540bf3aee': Added the feature to search AlphaFold structures with protein/gene names directly in iCn3D via the menu "File > Search Structures > AlphaFold Structures".
2 parents ff8e76d + c8bbb2f commit 62c9652

31 files changed

Lines changed: 885 additions & 401 deletions

CHANGELOG.md

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,6 @@
11
## Change Log
2+
[icn3d-3.27.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.27.0.zip) was release on July 13, 2023. Added the feature to search AlphaFold structures with protein/gene names directly in iCn3D via the menu "File > Search Structures > AlphaFold Structures".
3+
24
[icn3d-3.26.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.26.1.zip) was release on July 10, 2023. Fixed a bug in TM-align and updated Python scripts.
35

46
[icn3d-3.26.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.26.0.zip) was release on June 20, 2023. Added the feature to run ESMFold on the fly via the menu "File > AlphaFold/ESM > ESMFold" in iCn3D.

build/icn3d.js

Lines changed: 169 additions & 73 deletions
Large diffs are not rendered by default.

build/icn3d.min.js

Lines changed: 3 additions & 3 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

build/icn3d.module.js

Lines changed: 169 additions & 73 deletions
Large diffs are not rendered by default.

dist/CHANGELOG.md

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,7 @@
11
## Change Log
2-
[icn3d-3.26.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.26.1.zip) was release on July 10, 2023. Fixed a bug in TM-align.
2+
[icn3d-3.27.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.27.0.zip) was release on July 13, 2023. Added the feature to search AlphaFold structures with protein/gene names directly in iCn3D via the menu "File > Search Structures > AlphaFold Structures".
3+
4+
[icn3d-3.26.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.26.1.zip) was release on July 10, 2023. Fixed a bug in TM-align and updated Python scripts.
35

46
[icn3d-3.26.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.26.0.zip) was release on June 20, 2023. Added the feature to run ESMFold on the fly via the menu "File > AlphaFold/ESM > ESMFold" in iCn3D.
57

dist/full.html

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -18,11 +18,11 @@
1818
<div id="div0"></div>
1919

2020
<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
21-
<link rel="stylesheet" href="icn3d_3.26.1.css">
21+
<link rel="stylesheet" href="icn3d_3.27.0.css">
2222
<script src="lib/jquery-3.5.0.min.js"></script>
2323
<script src="lib/jquery-ui-1.13.2.min.js"></script>
2424
<script src="lib/three_0.137.0.min.js"></script>
25-
<script src="icn3d_3.26.1.min.js"></script>
25+
<script src="icn3d_3.27.0.min.js"></script>
2626

2727
<script type="text/javascript">
2828

@@ -40,7 +40,7 @@
4040
alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
4141
}
4242
else {
43-
//$.getScript('icn3d_3.26.1.min.js', function() {
43+
//$.getScript('icn3d_3.27.0.min.js', function() {
4444
var version = 3;
4545
await launchIcn3d(version); //await
4646
//});
@@ -197,7 +197,7 @@
197197
else {
198198
var paraPos = cfg.command.indexOf(' | parameters ');
199199

200-
if(paraPos != -1) { //"&command=load mmdb 7DDD | parameters &mmdbid=7DDD; select..." the commands ends with '}}'.
200+
if(paraPos != -1) { // "&command=load mmdb 7DDD | parameters &mmdbid=7DDD; select..." the commands ends with '}}'.
201201
var tmpPos = cfg.command.indexOf('}}&');
202202
if(tmpPos != -1) { // more parameters after the command
203203
decodeSearch += cfg.command.substr(tmpPos + 2);

dist/full2.html

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -19,11 +19,11 @@
1919
<div id="div1" style="float:left;"></div>
2020

2121
<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
22-
<link rel="stylesheet" href="icn3d_3.26.1.css">
22+
<link rel="stylesheet" href="icn3d_3.27.0.css">
2323
<script src="lib/jquery-3.5.0.min.js"></script>
2424
<script src="lib/jquery-ui-1.13.2.min.js"></script>
2525
<script src="lib/three_0.137.0.min.js"></script>
26-
<script src="icn3d_3.26.1.min.js"></script>
26+
<script src="icn3d_3.27.0.min.js"></script>
2727

2828
<script type="text/javascript">
2929
$( document ).ready(async function() {
@@ -40,7 +40,7 @@
4040
alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
4141
}
4242
else {
43-
//$.getScript('icn3d_3.26.1.min.js', function() {
43+
//$.getScript('icn3d_3.27.0.min.js', function() {
4444
var version = 3;
4545
await launchIcn3d(version);
4646
//});
Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -19,11 +19,11 @@
1919
<div id="div1" style="float:left;"></div>
2020

2121
<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
22-
<link rel="stylesheet" href="icn3d_3.26.1.css">
22+
<link rel="stylesheet" href="icn3d_3.27.0.css">
2323
<script src="lib/jquery-3.5.0.min.js"></script>
2424
<script src="lib/jquery-ui-1.13.2.min.js"></script>
2525
<script src="lib/three_0.137.0.min.js"></script>
26-
<script src="icn3d_3.26.1.min.js"></script>
26+
<script src="icn3d_3.27.0.min.js"></script>
2727

2828
<script type="text/javascript">
2929
$( document ).ready(async function() {
@@ -40,7 +40,7 @@
4040
alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
4141
}
4242
else {
43-
//$.getScript('icn3d_3.26.1.min.js', function() {
43+
//$.getScript('icn3d_3.27.0.min.js', function() {
4444
var version = 3;
4545
await launchIcn3d(version);
4646
//});
Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -18,11 +18,11 @@
1818
<div id="div0"></div>
1919

2020
<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
21-
<link rel="stylesheet" href="icn3d_3.26.1.css">
21+
<link rel="stylesheet" href="icn3d_3.27.0.css">
2222
<script src="lib/jquery-3.5.0.min.js"></script>
2323
<script src="lib/jquery-ui-1.13.2.min.js"></script>
2424
<script src="lib/three_0.137.0.min.js"></script>
25-
<script src="icn3d_3.26.1.min.js"></script>
25+
<script src="icn3d_3.27.0.min.js"></script>
2626

2727
<script type="text/javascript">
2828

@@ -40,7 +40,7 @@
4040
alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
4141
}
4242
else {
43-
//$.getScript('icn3d_3.26.1.min.js', function() {
43+
//$.getScript('icn3d_3.27.0.min.js', function() {
4444
var version = 3;
4545
await launchIcn3d(version); //await
4646
//});
@@ -197,7 +197,7 @@
197197
else {
198198
var paraPos = cfg.command.indexOf(' | parameters ');
199199

200-
if(paraPos != -1) { //"&command=load mmdb 7DDD | parameters &mmdbid=7DDD; select..." the commands ends with '}}'.
200+
if(paraPos != -1) { // "&command=load mmdb 7DDD | parameters &mmdbid=7DDD; select..." the commands ends with '}}'.
201201
var tmpPos = cfg.command.indexOf('}}&');
202202
if(tmpPos != -1) { // more parameters after the command
203203
decodeSearch += cfg.command.substr(tmpPos + 2);

0 commit comments

Comments
 (0)