invest-compute/slurm_cluster_config/hpc-slurm.yml at a53892bc6a08152a15de26b27fe082410622717d · natcap/invest-compute · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

---

blueprint_name: hpc-slurm

vars:
  project_id: sdss-sdss-invest-compute
  deployment_name: hpc-slurm
  region: us-central1
  zone: us-central1-a

# Documentation for each of the modules used below can be found at
# https://github.com/GoogleCloudPlatform/hpc-toolkit/blob/main/modules/README.md

deployment_groups:
- group: primary
  modules:
  # Source is an embedded module, denoted by "modules/*" without ./, ../, /
  # as a prefix. To refer to a local module, prefix with ./, ../ or /
  - id: network
    source: modules/network/vpc
    settings:
      firewall_rules:
      - name: fw-allow-ssh
        direction: INGRESS
        ranges: [0.0.0.0/0]
        allow:
        - protocol: tcp
          ports: [22]
      - name: fw-allow-health-checks
        direction: INGRESS
        ranges: [35.191.0.0/16, 130.211.0.0/22]
        allow:
        - protocol: tcp
          ports: [5000]

  # Private Service Access (PSA) requires the compute.networkAdmin role which is
  # included in the Owner role, but not Editor.
  # PSA is a best practice for Filestore instances, but can be optionally
  # removed by deleting the private_service_access module and any references to
  # the module by Filestore modules.
  # https://cloud.google.com/vpc/docs/configure-private-services-access#permissions
  - id: private_service_access
    source: modules/network/private-service-access
    use: [network]
    settings:
      deletion_policy: "ABANDON"

  - id: homefs
    source: modules/file-system/filestore
    use: [network, private_service_access]
    settings:
      local_mount: /home

  - id: debug_nodeset
    source: community/modules/compute/schedmd-slurm-gcp-v6-nodeset
    use: [network]
    settings:
      node_count_dynamic_max: 4
      machine_type: n2-standard-2
      allow_automatic_updates: false

  - id: debug_partition
    source: community/modules/compute/schedmd-slurm-gcp-v6-partition
    use:
    - debug_nodeset
    settings:
      partition_name: debug
      exclusive: false # allows nodes to stay up after jobs are done
      is_default: true

  - id: compute_nodeset
    source: community/modules/compute/schedmd-slurm-gcp-v6-nodeset
    use: [network]
    settings:
      node_count_dynamic_max: 20
      bandwidth_tier: gvnic_enabled
      allow_automatic_updates: false
      startup_script: startup_script.sh

  - id: compute_partition
    source: community/modules/compute/schedmd-slurm-gcp-v6-partition
    use:
    - compute_nodeset
    settings:
      partition_name: compute

  - id: h3_nodeset
    source: community/modules/compute/schedmd-slurm-gcp-v6-nodeset
    use: [network]
    settings:
      node_count_dynamic_max: 20
      # Note that H3 is available in only specific zones. https://cloud.google.com/compute/docs/regions-zones
      machine_type: h3-standard-88
      # H3 does not support pd-ssd and pd-standard
      # https://cloud.google.com/compute/docs/compute-optimized-machines#h3_disks
      disk_type: pd-balanced
      bandwidth_tier: gvnic_enabled
      allow_automatic_updates: false

  - id: h3_partition
    source: community/modules/compute/schedmd-slurm-gcp-v6-partition
    use:
    - h3_nodeset
    settings:
      partition_name: h3

  - id: slurm_login
    source: community/modules/scheduler/schedmd-slurm-gcp-v6-login
    use: [network]
    settings:
      machine_type: n2-standard-4
      enable_login_public_ips: true
      static_ips: [10.0.0.3]

  - id: slurm_controller
    source: community/modules/scheduler/schedmd-slurm-gcp-v6-controller
    use:
    - network
    - debug_partition
    - compute_partition
    - h3_partition
    - homefs
    - slurm_login
    settings:
      enable_controller_public_ips: true