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janinoterko
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documentation updates + new version
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DESCRIPTION

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Package: eprscope
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Type: Package
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Title: Processing and Analysis of Electron Paramagnetic Resonance Data and Spectra in Chemistry
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Version: 0.1.14
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Version: 0.1.15
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Authors@R: person("Ján", "Tarábek",
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email = c("jan.tarabek@uochb.cas.cz",
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"jantar40@protonmail.com"),

NEWS.md

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# eprscope 0.1.15
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## 2025-08-11
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### Bug Fixes/Critical Updates
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* reading of spectrometer binary files (`.DTA` and `.spc`) is currently
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under development (follow the commits at
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[feat/read_binar_spectrs](https://github.com/jatanRT/eprscope/tree/feat/read_binar_spectrs))
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* functions to read instrumental spectrometer parameters:
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`readEPR_params_slct_...`, `readEPR_param_slct` and `readEPR_params_tabs`
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were completely updated in order to be ready for reading of binary
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spectrometer files
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* several fixes and/or updates in documentation (functions, including
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`Examples` + vignettes)
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* magnetic flux density *B*-unit conversion (G ↔ mT) + *B*-range
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of the interactive/exported data frame of simulated and experimental
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EPR spectrum in the `shinyApp01`/`plot_eval_ExpSim_app` are working
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properly right now
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* fixed bug in simultaneous reading of multiple files
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(see the `readEPR_Exp_Specs_multif`) where due to missing *Q* values
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(sensitivity factors) the EPR intensity was not correctly normalized
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and therefore `NA` values appeared
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* if user wants to fix the value of a simulation parameter
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(see the `optim.params.init` argument), during the optimization/fitting
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procedure by the `eval_sim_EPR_isoFit` function (i.e. the value will
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be not optimized by the least-squares method), one can easily point
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to index of the `optim.params.init` vector by the `optim.params.fix.id`
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argument to keep the corresponding simulation parameter constant during
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the fitting/optimization + this was additionally implemented
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in the `eval_sim_EPR_isoFit_space` function (please, refer
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to the function documentation)
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### Updates
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* an option to export parameters of the interactively simulated
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EPR spectrum as an initial `.R` script/code snippet was added
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to `shinyApp01`/`plot_eval_ExpSim_app` in order to be ready
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for the `eval_sim_EPR_isoFit` function, therefore user does not
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have to write the code → this may speed up the analysis
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of the EPR spectrum
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* right now the covariance/correlation matrices can be returned as list
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components/values by several fitting/optimization functions
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like `eval_sim_EPR_isoFit`, `eval_kinR_EPR_modelFit`
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and `eval_kinR_Eyring_GHS` + these matrices can be very nicely
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visualized by
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the [corrplot](https://cran.r-project.org/web/packages/corrplot/vignettes/corrplot-intro.html)
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package and the corresponding `corrplot` function (see examples
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in documentation of the above-mentioned functions)
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* `eval_integ_EPR_Spec` and `quantify_EPR_Sim_series` code cleaning →
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simplified EPR spectrum integration code based on *B*-unit
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# eprscope 0.1.14
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## 2025-05-11

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