jsrc

Python library for bioinformatics and scientific computing.

Installation

Recommended (global CLI via uv tool):

uv tool install jsrc

Using uv virtual environment:

uv venv
source .venv/bin/activate
uv pip install jsrc

Using Conda virtual environment + pip:

conda create -n jsrc python=3.11 -y
conda activate jsrc
pip install jsrc

jsrc --help
jsrc <module> --help
jsrc <module> <subcommand> --help

module	description
`seq`	Sequence extraction, renaming, translation, QC, k-mer, window
`genome`	Genome statistics, feature detection, comparative/evolutionary analysis
`plot`	Gene/exon/chromosome/domain and utility visualizations
`analyze`	Phylogeny, motif, consensus, SNP/INDEL, QC
`grn`	GRN conversion, centrality calculation, build packaging/service
`vision`	Image contour extraction, EFD descriptors, morphology traits
`job`	Background job management (`submit/ls/show/logs/kill/history/gc`)