Feat: add genome/cai.py — per-gene Codon Adaptation Index #44
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - run: uv python install 3.12 | |
| - run: uv sync --python 3.12 --extra dev | |
| - run: uv run ruff check src tests | |
| - run: uv run black --check src/ tests/ | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| enable-cache: true | |
| - run: uv sync --extra dev --extra all | |
| - run: uv run pytest tests/ | |
| - run: uv build |