Skip to content

Commit a44fd0f

Browse files
authored
Adjust parameter constraints for LexicMap search (#8169)
1 parent e243ed2 commit a44fd0f

1 file changed

Lines changed: 2 additions & 2 deletions

File tree

tools/lexicmap/lexicmap.xml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
<tool id="lexicmap_search" name="LexicMap Search" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE_VERSION@">
1+
<tool id="lexicmap_search" name="LexicMap Search" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE_VERSION@">
22
<description>nucleotide sequence tool for querying genomes</description>
33
<macros>
44
<import>macros.xml</import>
@@ -98,7 +98,7 @@
9898
<param argument="-align-ext-len" min="0" value="1000" type="integer" label="Align extend length" help="Extend length of upstream and downstream of seed regions, for extracting query and target sequences for alignment. It should be &lt;= contig interval length in database." />
9999
<param argument="-align-max-gap" value="20" type="integer" label="Align max gap" help="Maximum gap in a HSP segment." />
100100
<param argument="--align-min-match-len" value="50" type="integer" label="Align min match length" help="Minimum aligned length in a HSP segment." />
101-
<param argument="--align-min-match-pident" value="70" type="float" label="Align min match pident" help="Minimum base identity (percentage) in a HSP segment." />
101+
<param argument="--align-min-match-pident" min="60" value="70" max="100" type="float" label="Align min match pident" help="Minimum base identity (percentage) in a HSP segment. Should be between 60 and 100." />
102102
<param argument="--all" type="boolean" truevalue="--all" falsevalue="" checked="false" label="All all columns" help="Output more columns, e.g., matched sequences. Use this if you want to output blast-style format with 'lexicmap utils 2blast'." />
103103
<param argument="--load-whole-seeds" type="boolean" truevalue="--load-whole-seeds" falsevalue="" checked="false" label="Load whole seeds" help="Load the whole seed data into memory for faster search" />
104104
<param argument="--max-evalue" value="10" type="float" label="Max evalue" help="Maximum evalue of a HSP segment." />

0 commit comments

Comments
 (0)