Update 02e_manual_technical_matters.Rmd #30
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| name: build-book | |
| jobs: | |
| build: | |
| name: Build-Book | |
| runs-on: macOS-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| - name: Setup R | |
| id: install-r | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-2-${{ hashFiles('.github/r-depends.rds') }} | |
| restore-keys: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-2- | |
| - name: Install macOS system dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install libgit2 libxml2 | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "sessioninfo")) | |
| shell: Rscript {0} | |
| - name: Install rmarkdown | |
| run: | | |
| install.packages("rmarkdown") | |
| install.packages("bslib") | |
| install.packages("downlit") | |
| install.packages("bookdown") | |
| install.packages("xml2") | |
| shell: Rscript {0} | |
| - name: Install book dependencies | |
| run: | | |
| install.packages(c("dplyr", "data.table", "here", "sessioninfo")) | |
| shell: Rscript {0} | |
| - name: Install biodosetools | |
| run: | | |
| install.packages("biodosetools") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Cache bookdown results | |
| uses: actions/cache@v4 | |
| with: | |
| path: _bookdown_files | |
| key: bookdown-2-${{ hashFiles('**/*Rmd') }} | |
| - name: Build site | |
| run: Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)' | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: _book | |
| path: _book/ | |
| # Need to first create an empty gh-pages branch | |
| # see https://pkgdown.r-lib.org/reference/deploy_site_github.html | |
| # and also add secrets for a GH_PAT and EMAIL to the repository | |
| # gh-action from Cecilapp/GitHub-Pages-deploy | |
| checkout-and-deploy: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4.1.7 | |
| with: | |
| # Artifact name | |
| name: _book # optional | |
| # Destination path | |
| path: _book # optional | |
| - name: Deploy to GitHub Pages | |
| uses: Cecilapp/GitHub-Pages-deploy@v3 | |
| env: | |
| EMAIL: ${{ secrets.EMAIL }} # must be a verified email | |
| GITHUB_TOKEN: ${{ secrets.GH_PAT }} # https://github.com/settings/tokens | |
| with: | |
| build_dir: _book/ # "_site/" by default |