From 0bf4f742e5671405e4e01c905fcf10b4f66ad245 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 22 Jun 2026 09:13:16 +0000 Subject: [PATCH] chore(backend)(deps): bump the python-dependencies group Bumps the python-dependencies group in /backend with 10 updates: | Package | From | To | | --- | --- | --- | | [fastapi](https://github.com/fastapi/fastapi) | `0.137.1` | `0.138.0` | | [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.14.1` | `2.14.2` | | [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.50` | `2.0.51` | | [aiosmtplib](https://github.com/cole/aiosmtplib) | `5.1.1` | `5.1.2` | | [ruff](https://github.com/astral-sh/ruff) | `0.15.17` | `0.15.18` | | [pytest](https://github.com/pytest-dev/pytest) | `9.1.0` | `9.1.1` | | [anyio](https://github.com/agronholm/anyio) | `4.13.0` | `4.14.0` | | [certifi](https://github.com/certifi/python-certifi) | `2026.5.20` | `2026.6.17` | | [greenlet](https://github.com/python-greenlet/greenlet) | `3.5.1` | `3.5.2` | | [pydantic-core](https://github.com/pydantic/pydantic) | `2.46.4` | `2.47.0` | Updates `fastapi` from 0.137.1 to 0.138.0 - [Release notes](https://github.com/fastapi/fastapi/releases) - [Commits](https://github.com/fastapi/fastapi/compare/0.137.1...0.138.0) Updates `pydantic-settings` from 2.14.1 to 2.14.2 - [Release notes](https://github.com/pydantic/pydantic-settings/releases) - [Commits](https://github.com/pydantic/pydantic-settings/compare/v2.14.1...v2.14.2) Updates `sqlalchemy` from 2.0.50 to 2.0.51 - [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases) - [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst) - [Commits](https://github.com/sqlalchemy/sqlalchemy/commits) Updates `aiosmtplib` from 5.1.1 to 5.1.2 - [Release notes](https://github.com/cole/aiosmtplib/releases) - [Changelog](https://github.com/cole/aiosmtplib/blob/main/CHANGELOG.rst) - [Commits](https://github.com/cole/aiosmtplib/compare/v5.1.1...v5.1.2) Updates `ruff` from 0.15.17 to 0.15.18 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.15.17...0.15.18) Updates `pytest` from 9.1.0 to 9.1.1 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/9.1.0...9.1.1) Updates `anyio` from 4.13.0 to 4.14.0 - [Release notes](https://github.com/agronholm/anyio/releases) - [Commits](https://github.com/agronholm/anyio/compare/4.13.0...4.14.0) Updates `certifi` from 2026.5.20 to 2026.6.17 - [Commits](https://github.com/certifi/python-certifi/compare/2026.05.20...2026.06.17) Updates `greenlet` from 3.5.1 to 3.5.2 - [Changelog](https://github.com/python-greenlet/greenlet/blob/master/CHANGES.rst) - [Commits](https://github.com/python-greenlet/greenlet/compare/3.5.1...3.5.2) Updates `pydantic-core` from 2.46.4 to 2.47.0 - [Release notes](https://github.com/pydantic/pydantic/releases) - [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md) - [Commits](https://github.com/pydantic/pydantic/commits) --- updated-dependencies: - dependency-name: fastapi dependency-version: 0.138.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-dependencies - dependency-name: pydantic-settings dependency-version: 2.14.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: sqlalchemy dependency-version: 2.0.51 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: aiosmtplib dependency-version: 5.1.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: ruff dependency-version: 0.15.18 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: pytest dependency-version: 9.1.1 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: anyio dependency-version: 4.14.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-dependencies - dependency-name: certifi dependency-version: 2026.6.17 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-dependencies - dependency-name: greenlet dependency-version: 3.5.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-dependencies - dependency-name: pydantic-core dependency-version: 2.47.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-dependencies ... Signed-off-by: dependabot[bot] --- backend/pyproject.toml | 4 ++-- backend/requirements-dev.txt | 4 ++-- backend/requirements.txt | 16 ++++++++-------- 3 files changed, 12 insertions(+), 12 deletions(-) diff --git a/backend/pyproject.toml b/backend/pyproject.toml index bcb3ed29..d99fb305 100644 --- a/backend/pyproject.toml +++ b/backend/pyproject.toml @@ -52,7 +52,7 @@ rag = [ [dependency-groups] dev = [ - "ruff==0.15.17", + "ruff==0.15.18", "mypy==2.1.0", "types-jsonschema>=4.25.1.20250822", "types-pyyaml>=6.0.12.20260408", # Type stubs for PyYAML @@ -60,7 +60,7 @@ dev = [ ] test = [ "ga4gh-vrs>=2.1.3", - "pytest==9.1.0", + "pytest==9.1.1", "pytest-asyncio>=1.2.0", # Updated for pytest 8.x compatibility (0.21.1 incompatible) "pytest-cov==7.1.0", "pytest-xdist>=3.6.0", # Parallel test execution with per-worker DB isolation diff --git a/backend/requirements-dev.txt b/backend/requirements-dev.txt index e4a40b88..770dcd73 100644 --- a/backend/requirements-dev.txt +++ b/backend/requirements-dev.txt @@ -5,10 +5,10 @@ -r requirements.txt # Development tools (from [dependency-groups.dev]) -ruff==0.15.17 +ruff==0.15.18 mypy==2.1.0 # Testing (from [dependency-groups.test]) -pytest==9.1.0 +pytest==9.1.1 pytest-asyncio==1.4.0 pytest-cov==7.1.0 \ No newline at end of file diff --git a/backend/requirements.txt b/backend/requirements.txt index 911062c3..fe4c7b1e 100644 --- a/backend/requirements.txt +++ b/backend/requirements.txt @@ -6,7 +6,7 @@ aiohttp==3.14.1 # via hnf1b-api (pyproject.toml) aiosignal==1.4.0 # via aiohttp -aiosmtplib==5.1.1 +aiosmtplib==5.1.2 # via hnf1b-api (pyproject.toml) alembic==1.18.4 # via hnf1b-api (pyproject.toml) @@ -14,7 +14,7 @@ annotated-doc==0.0.4 # via fastapi annotated-types==0.7.0 # via pydantic -anyio==4.13.0 +anyio==4.14.0 # via # httpx # starlette @@ -37,7 +37,7 @@ bioutils==0.6.1 # via ga4gh-vrs canonicaljson==2.0.0 # via ga4gh-vrs -certifi==2026.5.20 +certifi==2026.6.17 # via # httpcore # httpx @@ -54,7 +54,7 @@ dnspython==2.8.0 # via email-validator email-validator==2.3.0 # via hnf1b-api (pyproject.toml) -fastapi==0.137.1 +fastapi==0.138.0 # via hnf1b-api (pyproject.toml) fastobo==0.14.1 # via pronto @@ -64,7 +64,7 @@ frozenlist==1.8.0 # aiosignal ga4gh-vrs==2.3.3 # via hnf1b-api (pyproject.toml) -greenlet==3.5.1 +greenlet==3.5.2 # via sqlalchemy h11==0.16.0 # via @@ -135,9 +135,9 @@ pydantic==2.13.4 # fastapi # ga4gh-vrs # pydantic-settings -pydantic-core==2.46.4 +pydantic-core==2.47.0 # via pydantic -pydantic-settings==2.14.1 +pydantic-settings==2.14.2 # via hnf1b-api (pyproject.toml) pyjwt==2.13.0 # via hnf1b-api (pyproject.toml) @@ -175,7 +175,7 @@ scipy==1.17.1 # via hnf1b-api (pyproject.toml) six==1.17.0 # via python-dateutil -sqlalchemy==2.0.50 +sqlalchemy==2.0.51 # via # hnf1b-api (pyproject.toml) # alembic