diff --git a/gluten-ut/spark40/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala b/gluten-ut/spark40/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
index 39004877ff..6ad34180c2 100644
--- a/gluten-ut/spark40/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
+++ b/gluten-ut/spark40/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
@@ -666,8 +666,6 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenFileMetadataStructSuite]
   enableSuite[GlutenParquetV1AggregatePushDownSuite]
   enableSuite[GlutenParquetV2AggregatePushDownSuite]
-    // TODO: Timestamp columns stats will lost if using int64 in parquet writer.
-    .exclude("aggregate push down - different data types")
   enableSuite[GlutenOrcV1AggregatePushDownSuite]
     .exclude("nested column: Count(nested sub-field) not push down")
   enableSuite[GlutenOrcV2AggregatePushDownSuite]
@@ -895,7 +893,9 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenDataFrameTransposeSuite]
   enableSuite[GlutenDefaultANSIValueSuite]
   enableSuite[GlutenDeprecatedDatasetAggregatorSuite]
-  // TODO: 4.x enableSuite[GlutenExplainSuite]  // 1 failure
+  disableSuite[GlutenExplainSuite](
+    "Validates Spark-specific physical plans and JVM codegen output, neither of which applies to " +
+      "Gluten's native execution plan")
   enableSuite[GlutenICUCollationsMapSuite]
   enableSuite[GlutenInlineTableParsingImprovementsSuite]
   enableSuite[GlutenJoinHintSuite]
@@ -1166,11 +1166,7 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenXPathFunctionsSuite]
   enableSuite[GlutenFallbackSuite]
   enableSuite[GlutenHashAggregationQuerySuite]
-    // TODO: fix on https://github.com/apache/gluten/issues/11919
-    .exclude("udaf with all data types")
   enableSuite[GlutenHashAggregationQueryWithControlledFallbackSuite]
-    // TODO: fix on https://github.com/apache/gluten/issues/11919
-    .exclude("udaf with all data types")
   enableSuite[GlutenHiveCommandSuite]
   enableSuite[GlutenHiveDDLSuite]
   enableSuite[GlutenHiveExplainSuite]
@@ -1271,10 +1267,6 @@ class VeloxTestSettings extends BackendTestSettings {
     .exclude("Dependent Batched Python UDFs and Scalar Pandas UDFs should not be combined")
     .exclude("Python UDF should not break column pruning/filter pushdown -- Parquet V2")
   enableSuite[GlutenStreamingQuerySuite]
-    // requires test resources that don't exist in Gluten repo
-    .exclude("detect escaped path and report the migration guide")
-    .exclude("ignore the escaped path check when the flag is off")
-    .excludeByPrefix("SPARK-51187")
   enableSuite[GlutenQueryExecutionSuite]
     // Rewritten to set root logger level to INFO so that logs can be parsed
     .exclude("Logging plan changes for execution")
diff --git a/gluten-ut/spark41/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala b/gluten-ut/spark41/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
index f62a5dd0f4..0b4a2041fa 100644
--- a/gluten-ut/spark41/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
+++ b/gluten-ut/spark41/src/test/scala/org/apache/gluten/utils/velox/VeloxTestSettings.scala
@@ -646,8 +646,6 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenFileMetadataStructSuite]
   enableSuite[GlutenParquetV1AggregatePushDownSuite]
   enableSuite[GlutenParquetV2AggregatePushDownSuite]
-    // TODO: Timestamp columns stats will lost if using int64 in parquet writer.
-    .exclude("aggregate push down - different data types")
   enableSuite[GlutenOrcV1AggregatePushDownSuite]
     .exclude("nested column: Count(nested sub-field) not push down")
   enableSuite[GlutenOrcV2AggregatePushDownSuite]
@@ -875,7 +873,9 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenDataFrameTableValuedFunctionsSuite]
   enableSuite[GlutenDataFrameTransposeSuite]
   enableSuite[GlutenDeprecatedDatasetAggregatorSuite]
-  // TODO: 4.x enableSuite[GlutenExplainSuite]  // 1 failure
+  disableSuite[GlutenExplainSuite](
+    "Validates Spark-specific physical plans and JVM codegen output, neither of which applies to " +
+      "Gluten's native execution plan")
   enableSuite[GlutenICUCollationsMapSuite]
   enableSuite[GlutenInlineTableParsingImprovementsSuite]
   enableSuite[GlutenJoinHintSuite]
@@ -1162,11 +1162,7 @@ class VeloxTestSettings extends BackendTestSettings {
   enableSuite[GlutenFallbackSuite]
   enableSuite[GlutenRowBasedChecksumSuite]
   enableSuite[GlutenHashAggregationQuerySuite]
-    // TODO: fix on https://github.com/apache/gluten/issues/11919
-    .exclude("udaf with all data types")
   enableSuite[GlutenHashAggregationQueryWithControlledFallbackSuite]
-    // TODO: fix on https://github.com/apache/gluten/issues/11919
-    .exclude("udaf with all data types")
   enableSuite[GlutenHiveCommandSuite]
   enableSuite[GlutenHiveDDLSuite]
   enableSuite[GlutenHiveExplainSuite]
@@ -1270,30 +1266,9 @@ class VeloxTestSettings extends BackendTestSettings {
     .exclude("Dependent Batched Python UDFs and Scalar Pandas UDFs should not be combined")
     .exclude("Python UDF should not break column pruning/filter pushdown -- Parquet V2")
   enableSuite[GlutenStreamingQuerySuite]
-    // requires test resources that don't exist in Gluten repo
-    .exclude("detect escaped path and report the migration guide")
-    .exclude("ignore the escaped path check when the flag is off")
-    .excludeByPrefix("SPARK-51187")
-    // TODO: fix on Spark-4.1 introduced by https://github.com/apache/spark/pull/52645
-    .exclude("SPARK-53942: changing the number of stateless shuffle partitions via config")
-    .exclude("SPARK-53942: stateful shuffle partitions are retained from old checkpoint")
   enableSuite[GlutenStreamRealTimeModeAllowlistSuite]
-    // TODO: fix on Spark-4.1 see https://github.com/apache/spark/pull/52891
-    .exclude("rtm operator allowlist")
-    .exclude("repartition not allowed")
-    .exclude("stateful queries not allowed")
   enableSuite[GlutenStreamRealTimeModeE2ESuite]
-    // TODO: fix on Spark-4.1 see https://github.com/apache/spark/pull/52870
-    .exclude("foreach")
-    .exclude("union - foreach")
-    .exclude("mapPartitions")
-    .exclude("union - mapPartitions")
-    .exclude("stream static join")
-    .exclude("to_json and from_json round-trip")
-    .exclude("generateExec passthrough")
   enableSuite[GlutenStreamRealTimeModeSuite]
-    // TODO: fix on Spark-4.1 see https://github.com/apache/spark/pull/52473
-    .exclude("processAllAvailable")
   enableSuite[GlutenQueryExecutionSuite]
     // Rewritten to set root logger level to INFO so that logs can be parsed
     .exclude("Logging plan changes for execution")