v0.1.0, add example

Author: WeisongZhao

Adaptive_Median_Filter-0.1.0.jar

@@ -1 +1,35 @@
-##Adaptive Median fiter
+## Adaptive Median fiter - imageJ plugin
+## Motivation
+The pulse pixels exsiting in images because of various reasons, and it happens offenly in confocal stype microscopes.
+Also, the uncleaned slides can lead to this problem.
+This plugin will handle this type of problems easily withou any blurring or re-doing experiments.
+## Installation
+###1. Add the `Adaptive_Median_Filter-0.1.0.jar` to your imageJ plugin folder as usual and it will show up in `process -> Adaptive median filter`:
+<p align='center'>
+    <img src='img/1.png' width='200'/>
+</p>
+
+###2. UI
+<p align='center'>
+    <img src='img/2.png' width='200'/>
+</p>
+
+#### The window and weight to filter the pulse pixels. Radius should be `3 or 5`. Threshold should be `1~10`.
+## Example
+<p align='center'>
+    <img src='img/3.png' width='600'/>
+</p>
+
+#### As the images visualized with imageJ is processed already with histogram equalization, it seems nothing serious to us(red arrows). However, as long as we want to futher process the data, it will influence much to us.</br> 
+### **The saved data:**
+<p align='center'>
+    <img src='img/5.png' width='600'/>
+</p>
+<p align='center'>
+    <img src='img/6.png' width='900'/>
+</p>
+#Filtered Result:
+<p align='center'>
+    <img src='img/4.png' width='600'/>
+</p>
+##No pulse and no time bar.

README.md

@@ -12,17 +12,16 @@
 		<relativePath />
 	</parent>
 
-	<groupId>com.mycompany</groupId>
-	<artifactId>Process_Pixels</artifactId>
-	<version>0.1.0-SNAPSHOT</version>
+	<groupId>com.HIT.weisongzhao</groupId>
+	<artifactId>Adaptive_Median_Filter</artifactId>
+	<version>0.1.0</version>
 
-	<name>Process Pixels</name>
-	<description>A Maven project implementing an ImageJ 1.x plugin.</description>
-	<url>http://mycompany.com/imagej/process-pixels/</url>
-	<inceptionYear>2012</inceptionYear>
+	<name>Adaptive Median Filter</name>
+	<url>https://github.com/WeisongZhao/AdaptiveMedian.imagej</url>
+	<inceptionYear>2019</inceptionYear>
 	<organization>
-		<name>My Company</name>
-		<url>http://mycompany.com/</url>
+		<name>Harbin Institute of Technology</name>
+		<url>http://en.hit.edu.cn/</url>
 	</organization>
 	<licenses>
 		<license>
@@ -33,9 +32,9 @@
 
 	<developers>
 		<developer>
-			<id>ctrueden</id>
-			<name>Curtis Rueden</name>
-			<url>http://imagej.net/User:Rueden</url>
+			<id>weisongzhao</id>
+			<name>Weisong Zhao</name>
+			<url>https://weisongzhao.github.io/</url>
 			<roles>
 				<role>lead</role>
 				<role>developer</role>
@@ -48,36 +47,12 @@
 	</developers>
 	<contributors>
 		<contributor>
-			<name>Johannes Schindelin</name>
-			<url>http://imagej.net/User:Schindelin</url>
-			<roles><role>founder</role></roles>
-			<properties><id>dscho</id></properties>
-		</contributor>
-		<contributor>
-			<name>Olivier Burri</name>
-			<url>http://imagej.net/User:Oburri</url>
-			<properties><id>lacan</id></properties>
-		</contributor>
-		<contributor>
-			<name>Mark Hiner</name>
-			<url>http://imagej.net/User:Hinerm</url>
-			<properties><id>hinerm</id></properties>
-		</contributor>
-		<contributor>
-			<name>Jules Maselbas</name>
-		</contributor>
-		<contributor>
-			<name>Kota Miura</name>
-			<url>http://imagej.net/User:Miura</url>
-			<properties><id>cmci</id></properties>
-		</contributor>
-		<contributor>
-			<name>Yili Zhao</name>
-			<url>http://imagej.net/User:Panovr</url>
-			<properties><id>panovr</id></properties>
+			<name>Weisong Zhao</name>
+			<url>https://weisongzhao.github.io/</url>
+			<roles><role>developer</role></roles>
+			<properties><id>weisongzhao</id></properties>
 		</contributor>
 	</contributors>
-
 	<mailingLists>
 		<mailingList>
 			<name>Image.sc Forum</name>
@@ -86,24 +61,24 @@
 	</mailingLists>
 
 	<scm>
-		<connection>scm:git:git://github.com/imagej/example-legacy-plugin</connection>
-		<developerConnection>scm:git:git@github.com:imagej/example-legacy-plugin</developerConnection>
+		<connection>scm:git:git://github.com/WeisongZhao/AdaptiveMedian.imagej</connection>
+		<developerConnection>scm:git:git@github.com:WeisongZhao/AdaptiveMedian.imagej</developerConnection>
 		<tag>HEAD</tag>
-		<url>https://github.com/imagej/example-legacy-plugin</url>
+		<url>https://github.com/WeisongZhao/AdaptiveMedian.imagej</url>
 	</scm>
 	<issueManagement>
 		<system>GitHub Issues</system>
-		<url>https://github.com/imagej/example-legacy-plugin/issues</url>
+		<url>https://github.com/WeisongZhao/AdaptiveMedian.imagej/issues</url>
 	</issueManagement>
 	<ciManagement>
 		<system>None</system>
 	</ciManagement>
 
 	<properties>
-		<package-name>com.mycompany.imagej</package-name>
-		<main-class>com.mycompany.imagej.Process_Pixels</main-class>
 		<license.licenseName>bsd_2</license.licenseName>
-		<license.copyrightOwners>My Company, Inc.</license.copyrightOwners>
+		<package-name>com.HIT.weisongzhao</package-name>
+		<main-class>com.HIT.weisongzhao.AdaptiveMedian</main-class>
+		<license.copyrightOwners>Weisong Zhao</license.copyrightOwners>
 	</properties>
 
 	<dependencies>
@@ -112,4 +87,5 @@
 			<artifactId>ij</artifactId>
 		</dependency>
 	</dependencies>
+	<description>An adaptive median filter plugin. It filters the pulse intensity with no bluring images. and removes time bar easily.</description>
 </project>

img/1.png

@@ -1,4 +1,4 @@
-package com.mycompany.imagej;
+package com.HIT.weisongzhao;
 import ij.*;
 
 import ij.gui.GenericDialog;