Hi @VascoElbrecht
I hope everything's going well!
I have been using PrimerMiner to develop some specific and metabarcoding primers, so I've been using some Geneious fasta files that I already have (but complying with your recommendations in the YT tutorial) instead of following the batch download steps.
The problem arises when I try to plot more than 4 individual fasta files with plot_alignment. Using 5 or more files results in an incomplete plot (without the consensus and nucleotide letter part) with the console returning this mistake:
> plot_alignments(alignments, Order_names=gsub(".*./._(.*)_.*", "\\1", alignments)) Error in list[[k]][start:end, 2:5] : subscript out of bounds
I have been trying to see if changing the height and width could solve it without any improvements. Any recommendations?
Hi @VascoElbrecht
I hope everything's going well!
I have been using PrimerMiner to develop some specific and metabarcoding primers, so I've been using some Geneious fasta files that I already have (but complying with your recommendations in the YT tutorial) instead of following the batch download steps.
The problem arises when I try to plot more than 4 individual fasta files with plot_alignment. Using 5 or more files results in an incomplete plot (without the consensus and nucleotide letter part) with the console returning this mistake:
> plot_alignments(alignments, Order_names=gsub(".*./._(.*)_.*", "\\1", alignments)) Error in list[[k]][start:end, 2:5] : subscript out of boundsI have been trying to see if changing the height and width could solve it without any improvements. Any recommendations?