ShapeWorks/python_requirements_bundled.txt at master · SCIInstitute/ShapeWorks · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
# Runtime Python packages for bundled ShapeWorks distribution.
# Derived from python_requirements.txt (pip-compile output) with these exclusions:
#
# NOT included (dev/docs/jupyter only):
#   mkdocs*, jupyter*, notebook*, ipython*, ipykernel*, grip, mike,
#   nbstripout, debugpy, mdutils, jupytext, nbclassic, flask, werkzeug,
#   itkwidgets, widgetsnbextension, ipywidgets, ipyvtk*, ipympl, ipycanvas,
#   ipydatawidgets, ipyevents
#
# NOT included (installed on demand):
#   torch, torchvision, torchaudio (via light-the-torch, GPU-specific)
#
# To regenerate: take python_requirements.txt, remove the above categories.
# All version pins match python_requirements.txt for reproducibility.

annotated-types==0.7.0
appdirs==1.4.4
arrow==1.3.0
attrs==25.3.0
babel==2.17.0
beautifulsoup4==4.13.5
bokeh==3.8.2
certifi==2025.8.3
cffi==2.0.0
charset-normalizer==3.4.3
click==8.2.1
click-pathlib==2020.3.13.0
colorama==0.4.6
colorcet==3.1.0
contourpy==1.3.3
cycler==0.12.1
decorator==5.2.1
defusedxml==0.7.1
django-s3-file-field-client==0.3.2
docopt==0.6.2
dwd==1.0.5
et-xmlfile==2.0.0
exceptiongroup==1.3.0
fonttools==4.61.0
fqdn==1.5.1
h11==0.16.0
hotelling==0.5.0
httpcore==1.0.9
httpx==0.28.1
idna==3.10
imageio==2.37.0
importlib-metadata==8.7.0
importlib-resources==6.5.2
isoduration==20.11.0
itk==5.4.4.post1
itk-core==5.4.4.post1
itk-elastix==0.21.0
itk-filtering==5.4.4.post1
itk-io==5.4.4.post1
itk-meshtopolydata==0.11.0
itk-numerics==5.4.4.post1
itk-registration==5.4.4.post1
itk-segmentation==5.4.4.post1
jinja2==3.1.6
joblib==1.5.2
kiwisolver==1.4.9
lark==1.2.2
light-the-torch==0.8.0
lxml==6.0.1
markupsafe==3.0.2
matplotlib==3.10.6
mbpls==1.0.4
mistune==3.3.0
narwhals==2.5.0
numpy==2.3.3
openpyxl==3.1.5
packaging==25.0
paginate==0.5.7
pandas==2.3.2
pandocfilters==1.5.1
param==2.2.1
patsy==1.0.1
pillow==12.3.0
platformdirs==4.4.0
pooch==1.8.2
prometheus-client==0.22.1
pycparser==2.23
pyct==0.5.0
pydantic==2.11.9
pydantic-core==2.33.2
pygments==2.19.2
pyparsing==3.2.4
pyrsistent==0.20.0
python-dateutil==2.9.0.post0
python-json-logger==3.3.0
pytz==2025.2
pyvista==0.46.3
pyxdg==0.28
pyyaml==6.0.2
referencing==0.36.2
requests==2.32.5
requests-toolbelt==1.0.0
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rfc3987-syntax==1.1.0
rich==14.1.0
rpds-py==0.27.1
scikit-learn==1.7.2
scipy==1.16.2
scooby==0.10.1
seaborn==0.13.2
shapely==2.1.1
simpleitk==2.5.2
six==1.17.0
sniffio==1.3.1
soupsieve==2.8.4
spm1d==0.4.53
statsmodels==0.14.5
swcc==1.1.0
termcolor==3.1.0
threadpoolctl==3.6.0
tinycss2==1.4.0
toml==0.10.2
tqdm==4.67.1
trimesh==4.8.1
types-python-dateutil==2.9.0.20250822
typing-extensions==4.15.0
typing-inspection==0.4.1
tzdata==2025.2
uri-template==1.3.0
urllib3==2.6.3
vtk==9.5.1
webcolors==24.11.1
webencodings==0.5.1
xyzservices==2025.4.0
zipp==3.23.0
zstandard==0.25.0