DOC: Add application options in the sphinx doc

Author: axel-grc

applications/rtkadmmtotalvariation/README.md

@@ -7,3 +7,15 @@ This script uses the SheppLogan phantom
 
 ```{literalinclude} TotalVariationRegularizedReconstruction.sh
 ```
+
+
+## Command line options
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkadmmtotalvariation/rtkadmmtotalvariation.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkadmmwavelets/README.md

@@ -7,3 +7,15 @@ This script uses the SheppLogan phantom
 
 ```{literalinclude} DaubechiesWavelets.sh
 ```
+
+
+## Command line options
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkadmmwavelets/rtkadmmwavelets.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkamsterdamshroud/README.md

@@ -26,3 +26,16 @@ rtkextractshroudsignal --input shroud.mha \
 Phase is commonly measured in radians, with values in $[0,2\pi[$, but in RTK it is normalized to $[0,1[$, where 0.3 corresponds to 30% in the respiratory cycle, i.e., frame 3 if you have a 10-frames 4D reconstruction or frame 6 if you have a 20-frames 4D reconstruction. The [resulting phase](https://data.kitware.com/api/v1/item/5be99af98d777f2179a2e160/download) is in green on top of the blue respiratory signal and the detected end-exhale peaks:
 
 ![Signal](../../documentation/docs/ExternalData/Signal.jpg){w=800px alt="Phase signal"}
+
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkamsterdamshroud/rtkamsterdamshroud.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkbackprojections/README.md

@@ -7,3 +7,16 @@ Backprojects a volume according to a geometry file. See available projectors [he
 
 ```{literalinclude} BackProjections.sh
 ```
+
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkbackprojections/rtkbackprojections.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkbioscangeometry/README.md

@@ -13,3 +13,15 @@ rtkbioscangeometry \
 	--regexp 'bioscan.dcm' \
 	--verbose
 ```
+
+
+## Command line options
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+	:filename: applications/rtkbioscangeometry/rtkbioscangeometry.py
+	:func: build_parser
+	:nodescription:
+```
+::::

applications/rtkcheckimagequality/README.md

@@ -14,3 +14,16 @@ rtkcheckimagequality -i ref1.mha ref2.mha -j rec1.mha rec2.mha -t 1e-3 2e-3
 # Broadcast a single threshold to multiple comparisons
 rtkcheckimagequality -i ref1.mha ref2.mha -j rec1.mha rec2.mha -t 2e-3
 ```
+
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+	:filename: applications/rtkcheckimagequality/rtkcheckimagequality.py
+	:func: build_parser
+	:nodescription:
+```
+::::

applications/rtkconjugategradient/README.md

@@ -39,3 +39,16 @@ In the presence of noise, all projection data may not be equally reliable. The c
 ```
 ````
 `````
+
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+	:filename: applications/rtkconjugategradient/rtkconjugategradient.py
+	:func: build_parser
+	:nodescription:
+```
+::::

applications/rtkdigisensgeometry/README.md

@@ -9,3 +9,15 @@ rtkdigisensgeometry \
   --xml_file calibration.cal \
   -o geometry.xml
 ```
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkdigisensgeometry/rtkdigisensgeometry.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkdrawgeometricphantom/README.md

@@ -8,3 +8,16 @@ This script uses the file [Gammex.txt](https://data.kitware.com/api/v1/file/6762
  # Create a 3D Gammex phantom
  rtkdrawgeometricphantom --phantomfile Gammex.txt -o gammex.mha
  ```
+
+
+## Command line options
+
+
+::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.py
+  :func: build_parser
+  :nodescription:
+```
+::::

applications/rtkdrawshepploganphantom/README.md

@@ -7,3 +7,16 @@ See rtkfdk example:
 ```{literalinclude} ../rtkfdk/FDK3D.sh
 
  ```
+
+
+## Command line options
+
+
+ ::::{container} argparse-no-usage
+```{eval-rst}
+.. argparse::
+  :filename: applications/rtkdrawshepploganphantom/rtkdrawshepploganphantom.py
+  :func: build_parser
+  :nodescription:
+```
+::::