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‎examples/atlas/sweep_results/Blood_ans.csv‎

Lines changed: 55 additions & 19 deletions
Original file line numberDiff line numberDiff line change
@@ -81,7 +81,7 @@ Dataset_id,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_c
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config_dict:
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feature_channel: SCNFeature
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label_channel: cell_type
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target: FilterGenesScanpyOrder
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params:
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@@ -108,7 +108,7 @@ Dataset_id,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_c
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config_dict:
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feature_channel: SCNFeature
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111-
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target: FilterGenesPlaceHolder
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params: {}
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- type: normalize
@@ -1481,7 +1481,7 @@ eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesScanpyOrder
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@@ -1515,7 +1515,7 @@ eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesScanpyOrder
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@@ -1719,7 +1719,7 @@ eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPercentile
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params: {}
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- type: normalize
@@ -1744,7 +1744,7 @@ eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569,"step2:https://wandb.ai/xzy11632/dance-dev/
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@@ -2617,7 +2617,7 @@ ae29ebd0-1973-40a4-a6af-d15a5f77a80f,"step2:https://wandb.ai/xzy11632/dance-dev/
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@@ -2651,7 +2651,7 @@ ae29ebd0-1973-40a4-a6af-d15a5f77a80f,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesScanpyOrder
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@@ -2874,7 +2874,7 @@ bc260987-8ee5-4b6e-8773-72805166b3f7,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesScanpyOrder
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@@ -2908,7 +2908,7 @@ bc260987-8ee5-4b6e-8773-72805166b3f7,"step2:https://wandb.ai/xzy11632/dance-dev/
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params:
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target: FilterGenesScanpyOrder
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@@ -3455,7 +3455,7 @@ d9b4bc69-ed90-4f5f-99b2-61b0681ba436,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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target: FilterGenesPlaceHolder
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params: {}
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- type: normalize
@@ -3473,7 +3473,7 @@ d9b4bc69-ed90-4f5f-99b2-61b0681ba436,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPlaceHolder
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- type: normalize
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target: Log1P
@@ -4332,7 +4332,7 @@ c7775e88-49bf-4ba2-a03b-93f00447c958,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPercentile
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params: {}
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- type: normalize
@@ -4357,7 +4357,7 @@ c7775e88-49bf-4ba2-a03b-93f00447c958,"step2:https://wandb.ai/xzy11632/dance-dev/
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params:
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target: FilterGenesPlaceHolder
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- type: normalize
@@ -4703,7 +4703,43 @@ c2a461b1-0c15-4047-9fcb-1f966fe55100,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPlaceHolder
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params: {}
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- type: normalize
4710+
target: NormalizeTotalLog1P
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params: {}
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- type: filter.gene
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target: HighlyVariableGenesLogarithmizedByTopGenes
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params:
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n_top_genes: 3000
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target: SCNFeature
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target: FilterGenesPlaceHolder
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params: {}
4727+
- type: normalize
4728+
target: NormalizeTotalLog1P
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params: {}
4730+
- type: filter.gene
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target: HighlyVariableGenesLogarithmizedByTopGenes
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params:
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4734+
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target: FilterGenesPlaceHolder
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target: NormalizeTotalLog1P
@@ -4952,7 +4988,7 @@ b0e547f0-462b-4f81-b31b-5b0a5d96f537,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPercentile
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@@ -4977,7 +5013,7 @@ b0e547f0-462b-4f81-b31b-5b0a5d96f537,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPlaceHolder
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@@ -5125,7 +5161,7 @@ d7d7e89c-c93a-422d-8958-9b4a90b69558,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPlaceHolder
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- type: normalize
@@ -5150,7 +5186,7 @@ d7d7e89c-c93a-422d-8958-9b4a90b69558,"step2:https://wandb.ai/xzy11632/dance-dev/
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target: FilterGenesPercentile
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params: {}
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- type: normalize

‎examples/atlas/sweep_results/Brain_ans.csv‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -2357,7 +2357,7 @@ Dataset_id,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_c
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params:
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config_dict:
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label_channel: cell_type
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",0.33899998664855957,all_total_runs:90|all_finished_runs:84|step2_total_runs:30|step2_finished_runs:27|step3_0_total_runs:20|step3_0_finished_runs:19|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:18|finished_rate:93.33%,False,"- type: filter.gene
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",0.3389999866485595,all_total_runs:90|all_finished_runs:84|step2_total_runs:30|step2_finished_runs:27|step3_0_total_runs:20|step3_0_finished_runs:19|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:18|finished_rate:93.33%,False,"- type: filter.gene
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target: FilterGenesPercentile
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params: {}
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- type: normalize
@@ -2585,7 +2585,7 @@ Dataset_id,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_c
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params:
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config_dict:
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label_channel: cell_type
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",0.49050000309944153,all_total_runs:90|all_finished_runs:63|step2_total_runs:30|step2_finished_runs:29|step3_0_total_runs:20|step3_0_finished_runs:0|step3_1_total_runs:20|step3_1_finished_runs:19|step3_2_total_runs:20|step3_2_finished_runs:15|finished_rate:70.00%,False,"- type: filter.gene
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",0.4905000030994415,all_total_runs:90|all_finished_runs:63|step2_total_runs:30|step2_finished_runs:29|step3_0_total_runs:20|step3_0_finished_runs:0|step3_1_total_runs:20|step3_1_finished_runs:19|step3_2_total_runs:20|step3_2_finished_runs:15|finished_rate:70.00%,False,"- type: filter.gene
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target: FilterGenesScanpyOrder
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params:
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order:
@@ -2619,7 +2619,7 @@ Dataset_id,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_c
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params:
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config_dict:
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label_channel: cell_type
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",0.49050000309944153,step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o9qms9l2|step3:,"- type: filter.gene
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",0.4905000030994415,step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o9qms9l2|step3:,"- type: filter.gene
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target: FilterGenesScanpyOrder
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params:
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order:
@@ -5173,7 +5173,7 @@ ed11cc3e-2947-407c-883c-c53b043917c3,"step2:https://wandb.ai/xzy11632/dance-dev/
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params:
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config_dict:
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label_channel: cell_type
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",0.48046648502349854,step2:https://wandb.ai/xzy11632/dance-dev/sweeps/pfa7ibv0|step3:,"- type: filter.gene
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",0.4804664850234985,step2:https://wandb.ai/xzy11632/dance-dev/sweeps/pfa7ibv0|step3:,"- type: filter.gene
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target: FilterGenesPercentile
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params: {}
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- type: normalize

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