systole/pyproject.toml at main · LegrandNico/systole · GitHub

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[project]
name = "systole"
description = "Systole: A python package for cardiac signal synchrony and analysis"
authors = [
    { name = "Nicolas Legrand", email = "nicolas.legrand@cas.au.dk" },
    { name = "Micah Allen", email = "micah@cfin.au.dk" }
]
maintainers = [
    { name = "Nicolas Legrand", email = "nicolas.legrand@cas.au.dk" }
]
license = "GPL-3.0"
requires-python = ">=3.11,<=3.14"
readme = "README.rst"
keywords = ["ECG", "PPG", "respiration", "signal processing", "pulse oximeter", "heart rate variability"]
classifiers = [
    "Programming Language :: Python :: Implementation :: CPython",
    "Programming Language :: Python :: Implementation :: PyPy",
]
dynamic = ["version"]
dependencies = [
    "numpy>=2.0.0,<=2.2.0",
    "matplotlib>=3.4.0",
    "scipy>=1.3.0",
    "pandas>=2.2.3",
    "seaborn>=0.9.0",
    "bokeh>=3.0.0",
    "pyserial>=3.4",
    "setuptools>=78.1.0",
    "numba>=0.61.0",
    "tqdm",
    "requests>=2.26.0",
    "tabulate>=0.8.9",
    "sleepecg>=0.5.1",
    "joblib>=1.3.2",
    "watermark>=2.5.0",
]

[project.urls]
homepage = "https://legrandnico.github.io/systole/#"
repository = "https://github.com/LegrandNico/systole"
documentation = "https://legrandnico.github.io/systole/#"

[tool.poetry]
packages = [{ include = "systole", from = "src" }]
include = ["README.rst",
    "LICENSE",
    "requirements.txt",
    "systole/reports/subject_level.html",
    "systole/reports/group_level.html",
    "systole/reports/images/logo.svg"
    ]
version = "0.0.0"

[build-system]
requires = ["setuptools>=61", "poetry-core", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
build-backend = "poetry_dynamic_versioning.backend"

[tool.poetry.requires-plugins]
poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] }

[tool.poetry-dynamic-versioning]
# Enable dynamic versioning
enable = true
style = "pep440"

[tool.poetry-dynamic-versioning.substitution]
files = [".src/systole/__init__.py"]

[tool.poetry.group.dev.dependencies]
papermill = ">=2.6.0"
pytest = "^8.3.5"
ipywidgets = "^8.1.5"
ipympl = "^0.9.7"
pydata-sphinx-theme = "^0.16.1"
sphinx_bootstrap_theme= "^0.8.1"
sphinx-gallery = "^0.19.0"
jupyter_sphinx = "^0.5.3"
sphinx_design = "^0.6.1"
myst-nb = "^1.2.0"
sphinx = "^8.2.3"
numpydoc = "^1.8.0"
myst-parser = "^4.0.1"
sphinxcontrib-bibtex = "^2.6.3"
pytest-cov = "^6.1.0"

[tool.poetry.scripts]
systole = "systole.reports.command_line:main"

[tool.ruff]
select = ["D"]
extend-include = ["*.ipynb"]
ignore = ["D100", "D104"]

[tool.ruff.pydocstyle]
convention = "numpy"